Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03221 ATGGTGGAGCTTCGAAGGTTGTTGCTGTTGTTGTGCATCACCACCACCTGCATTCTTTCTTCGATGCCCAATGATGCCACTGCCGTCACAGATCCAAATGACGTTATTGCTGTGAAAACTTTGCTTCAAAGCTTGAACTCAGCCTCCCAGCTAGGTTGGCCTGCTAATGGTGATGATCCATGTGGACAATCTTGGAAAGGCATTACTTGCTCAGGCAACCGTGTTACAGAGATTAAGTTATCTAATCTTGGACTAACTGGAACATTGCCTTACGGATTACAAGTCCTGTCATCTTTGACCGACCTAGATATGAGTAGCAACAATCTTGGAGGCACCATACCATACCAACTTCCTCCTTATGTGCAACGCTTAAATCTTGCTTACAATAACATCACAGGGACAGTCCCTTACTCTATTTCTAACTTGACCGCTCTTACAGACCTGAATCTTGGTCACAATCAACTCCAGCAAGGACTGGGTGTTGACTTTCTTAACCTCTCTACCCTCTTCAAATTGGATCTCTCCTTCAATTCTCTAACAGGTGATCTCCCTCAGACTGTGACCTCACTTTCACGCATAACCACCATGTATCTACAAAATAACCAGTTCACAGGCACTTTAGATGTCCTTGCTAATCTGCCGCTGGATAATCTGAATGTGGAAAACAATAATTTTACAGGATGGATACCAGAACAGTTGAAGAACATAAACATACAGACTGGTGGTAATGCATGGAGCTCAGGACCTGCACCCCCACCTCCCCCTGGGATACCTCTAGCACCTAAAAGCAACCGGCACCACAAGTCTAGTGGTGGAAGCACCACCTCCTCAAATGTAGGCAGTGACAGCAGCTCAACTGATGAGGGCAAAAAATCTGGTATAGGGGGTGGTGGCATAGCTGGAATTGCGATCTCCGTCATTGTTGTAGGGGCAATAGTAGCATTCTTTTTGGTGAAGAAAAAATCCAAGAAGTCATCTTCAGATTTAGAAAAGCTGGGCAATCAGTCTTTTACTCCACATCCTTCAAAGGAAGTGCATGAAGAAAAGTCTGTGCAAACTTCCTCAGTAACtgacttgaagacttttgatacttctgcctcaataaatcttaaaccccctCCTATTGATCGTCATAAATCATTTGATGATGAAGAATTCTCCAAGAAGCCCACAATTGTGAAGAAGACTGTAACAGCTCCTGCAAATGTGAAATCATATTCTATTGCTGAATTACAGATTGCTACTGGCAGCTTCAGTGTGGATCACCTTGTTGGTGAGGGGTCTTTTGGGCGTGTGTTTTGCGCTCAATTTGATGATGGACAGGTTCTTGCGGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGTCAGATGATTTTATAGAAATAATTTCAAACATCTCCAATTTACATCATCCAAATGTGACAGAGCTTGTAGGTTATTGCTCAGAGTATGGACAACACCTCTTGGTCTATGAATTTCATAAAAATGGATCACTCCATGACTTTCTTCATCTATCAGATGAATATAGTAAACCATTGATATGGAATTCCCGTGTCAAGATTGCTTTGGGGACTGCTCGTGCTTTAGAGTACCTACATGAAGTTAGTTCTCCATCAGTTGTTCATAAGAATATTAAGTCAGCCAACATATTACTTGATGCAGAGCTTAATCCTCACCTTTCAGATAGTGGATTGGCAAGTTATATTCCAAATGCAGACCAGGTATTGAGCCTTAATGTTGGATCTGGATACGATGCACCTGAAGTTGCCCTGTCTGGTCAGTATACTTTGAAAAGTGATGTCTACAGTTTTGGAGTTGTCATGTTGGAACTTCTCAGCGGACGGAAACCATTTGATAGCTCAAGGCCAAGATCTGAGCAGTCTCTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGGTAAAATGGTTGATCCTGCACTGAAAGGGCTATATCCTGTTAAGTCGCTTTCTCGATTTGCTGATGTTATTGCACTTTGCGTTCAGCCGGAACCTGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTGGTGCGATTAGTGCAGCGAGCTAACATGAGCAAGCGAACATTTAGTAGTAGTGATCATGGAGGGTCCCAACGAGGGAGTGATGAACCAGTTCTACGGGACCTCTAA 2175 0.4234 MVELRRLLLLLCITTTCILSSMPNDATAVTDPNDVIAVKTLLQSLNSASQLGWPANGDDPCGQSWKGITCSGNRVTEIKLSNLGLTGTLPYGLQVLSSLTDLDMSSNNLGGTIPYQLPPYVQRLNLAYNNITGTVPYSISNLTALTDLNLGHNQLQQGLGVDFLNLSTLFKLDLSFNSLTGDLPQTVTSLSRITTMYLQNNQFTGTLDVLANLPLDNLNVENNNFTGWIPEQLKNINIQTGGNAWSSGPAPPPPPGIPLAPKSNRHHKSSGGSTTSSNVGSDSSSTDEGKKSGIGGGGIAGIAISVIVVGAIVAFFLVKKKSKKSSSDLEKLGNQSFTPHPSKEVHEEKSVQTSSVTDLKTFDTSASINLKPPPIDRHKSFDDEEFSKKPTIVKKTVTAPANVKSYSIAELQIATGSFSVDHLVGEGSFGRVFCAQFDDGQVLAVKKIDSSVLPNDLSDDFIEIISNISNLHHPNVTELVGYCSEYGQHLLVYEFHKNGSLHDFLHLSDEYSKPLIWNSRVKIALGTARALEYLHEVSSPSVVHKNIKSANILLDAELNPHLSDSGLASYIPNADQVLSLNVGSGYDAPEVALSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQSLVRWATPQLHDIDALGKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFSSSDHGGSQRGSDEPVLRDL 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03221 724 MobiDBLite consensus disorder prediction 266 290 - -
Cca03g03221 724 Gene3D Ribonuclease Inhibitor 36 119 IPR032675 -
Cca03g03221 724 MobiDBLite consensus disorder prediction 240 292 - -
Cca03g03221 724 Pfam Protein tyrosine and serine/threonine kinase 421 690 IPR001245 GO:0004672|GO:0006468
Cca03g03221 724 SUPERFAMILY Protein kinase-like (PK-like) 400 690 IPR011009 -
Cca03g03221 724 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 24 718 - -
Cca03g03221 724 Gene3D Phosphorylase Kinase; domain 1 380 495 - -
Cca03g03221 724 Pfam Leucine rich repeat N-terminal domain 40 71 IPR013210 -
Cca03g03221 724 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Cca03g03221 724 MobiDBLite consensus disorder prediction 328 356 - -
Cca03g03221 724 Gene3D Ribonuclease Inhibitor 120 247 IPR032675 -
Cca03g03221 724 SUPERFAMILY L domain-like 30 235 - -
Cca03g03221 724 MobiDBLite consensus disorder prediction 702 724 - -
Cca03g03221 724 Gene3D Transferase(Phosphotransferase) domain 1 497 712 - -
Cca03g03221 724 Pfam Leucine Rich repeat 97 111 IPR001611 GO:0005515
Cca03g03221 724 ProSiteProfiles Protein kinase domain profile. 418 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03221 724 PANTHER OS01G0253100 PROTEIN 24 718 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03221 Cca-Chr3 53608236 53615565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03221 4 703 Strubbelig Receptor Gene Family AT1G53730 64.639 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Cca03g03221 PK_Tyr_Ser-Thr 9.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03221 - - gmx:100807707 1204.89