Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03219 ATGACACAGGAAAGACCATCATCTTCCATCTACATGGTTTCCAAGTTCACAGTACTGTTGCTTCTGTCTGGGTTCCTTTTTCTTGTTCAAGCCTCCTCGTGCAACCAACTGGACAGAGAATCGCTCTTGGCCTTCTCCAGGAACATATCCACGCCCTCCCCTCTCAACTGGTCTGCTTCTGTTGATTGCTGTTTGTGGGAAGGCATTCAGTGTGATGGGGATCTCAGAGTCATACATCTTTTGCTACCATCCAGGGGTCTCACTGGTTTCATCTCCCCATCTCTCACAAACCTCACTGCTCTCTCCCACCTCAATCTCTCACATAACCGATTATCTTCTAATCTCCCAAACCAATTTTTCTCACTTCTCAATCACCTGCAGGTTCTTGATTTAAGCCACAATCGTCTCTCTGGTGAATTGCCACCCTTTGTAGCTGATATCAGTGGCAATAATACTATCCGGGAGCTGGATTTGTCTAGTAACTTATTCCACGGAACACTCGCACCTTCTCTCATACAGCACCTGGCAGGAGGGAGTTTGACATCTTTTAATGTTAGTAACAATAGCTTCACAGGTCAAATTCCCACTTCTCTCCTCTGTAGTAACCTCAGTAGCTCGTCCTCTCTCAGATTCCTGGATTATTCCTCCAACGATTTCGTTGGCGTGATCCAGCCTGGATTAGGAGCGTGTTCCAAGCTCGAGAAGTTTCGAGCAGGTTCCAATTTTCTGTCGGGATCCCTTCCCGGTGATATTTTTGATGTTGTTGCTCTCACAGAAATCTCGTTGCCCCTCAATAAACTCAGTGGAACCATTGGTGCGGGCATTGTTAACCTTACCAACCTCACAGTTTTGGAGCTCTATTCCAATAATTTTACGGGGCCCATTCCCAAGGATATTGGTAAGCTCTCCCAATTGGAACGCCTACTCCTTCACGCCAATAATCTAACTGGTACTCTGCCCACATCTCTGATGGACTGTGTCAATCTTGTCATGTTGGATATAAGGCTCAACTCCTTGGAGGGAGACCTCTCAGCATTGAATTTCTCCGGACTCCTCAAACTCACAGCACTTGACCTCGGCAACAATAGCTTTACCGGTATTTTACCACCATCCCTTTATGCCTGTAAGTCACTTAAAGCATTAAGGCTAGCATCTAATAAGTTTGAGGGACAGATCTCACCTGACATACTTGGACTTCAGTCTTTGGCTTTCCTATCTATTTCTACCAACAACCTCAGTAATGTCACTGAGTCTCTCAAGTTACTCATGGAACTCAAGAACCTTAGTACCCTTATGCTCTCCCAGAATTTTTTCAATGAAATGATGCCAAATGATGCCAACATAacaaatccagatggattccaaaagatccaagttCTAGGCTTGGGTGGTTGTAAATTCACCGGCCAAATACCACGCTGGCTTGTTAATCTGAAGAAGCTTGAGGTCTTGGATTTGTCCTATAATCAAATTAGTGGTTCAATTCCTCCTTGGTTGTACACACTTCCTGAGCTTTTCTACATAGACTTGTCTTTTAACCGCCTCACAGGAATATTTCCAACTGAGCTCACAAGGCTTCCAGCACTTACATCACAAAAGGCATATGATAAAGTAGAAAGGACTTACCTGGAGTTACCCGTATTTGCTAATGCCAACAATGTTTCTCAGATGCAATATAATCAGATTTCCAACCTACCACCAGCAATATATCTGGGAAACAATAGTCTCAATGGCAGTATCCCTACAGAGATTGGCCAACTTAAAGTCCTTCATCAGCTGGACCTTAGCTACAACAAATTCTCTGGCAACATACCATCAGAAATTTCTAACTTGATTAATTTAGAGAAGCTATACCTCTCAGGAAACCAACTTTCCGGTGAAATTCCCATTTCACTCAAAAGCTTGCATTTTTTGTCTGCTTTCAGTGTGGCATACAATGATCTTCAAGGAAAGATACCAACTGGTGGTCAATTTGATACTTTCCCCTCTTCCAGTTTTGAAGGAAACCCTCAGTTGTGTGGTTCGGTTGTTCAGCGCTCTTGTGTCCCTCAACAGGCTACTACTGCACGTGATCACAGCTCAAGCAAAAAGTTGATAATTGGATTTATCATTGCAGCCTGTTTTGGCACTGTTTCCTTCATTTCAGTGTTGATAGTGTGGATAATATCCAAGAGGAGGATCAATCCAGGTGGAGACTCTGACAAGATTGAACTAGAATCAATTTCTGCCAACTCTTACAGTGGGGTTCATCCTGAAGTTGACAAAGAGGCCAGCCGAGTGGTTCTGTTCCCTAATAAAACAAATGAAATCAGGGAACTTACCATATTTGAAATATTAAAAGCCACTGAAAATTTCAGTCAGGCAAACATAGTAGGATGTGGGGGGTTTGGTTTGGTTTATAAAGCAACGTTGCCAAATGGAACTACTCTGGCCATCAAGAAACTTTCAGGAGATTTGGGTCTTATGGAAAGGGAATTTAAAGCAGAGGTAGAAGCTTTGTCGACAGCACAACATGAAAATCTGGTTGCATTGCAAGGCTATTGTGTGCACGAGGGCTTTCGGCTTCTCATATATACTTACATGGAAAATGGAAGTCTGGATTACTGGCTGCATGAAAAGGCTGATGGTCCATCTCAACTTGATTGGCCTACTCGACTGAagattgcacaagGTACATTAGGTTACATACCCCCAGAGTACGGACAAGCATGGGTCGCAACTTTGAGAGGAGATGTCTACAGCTTTGGGGTTGTGATGCTTGAGCTGCTCACTGGGAGGAGGCCTGTAGATTTAAGCAAGTCTAAAATGTCAGGGGAGTTGGTTGCCTGGGTTCAACAAATGAGAAGTGAAGGAAAACAAGATCAAGTCTTTGATCCTCTTCTGAGAGGGAAGGACTTTGAAGAGGAGATGCAGCAGGTTCTTGATGTAGCCTGCATGTGTGTCAACGAGAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTGAAGAATGTAGGATCATCCAACCAGCAAATGAATAAAGACTAG 3036 0.4302 MTQERPSSSIYMVSKFTVLLLLSGFLFLVQASSCNQLDRESLLAFSRNISTPSPLNWSASVDCCLWEGIQCDGDLRVIHLLLPSRGLTGFISPSLTNLTALSHLNLSHNRLSSNLPNQFFSLLNHLQVLDLSHNRLSGELPPFVADISGNNTIRELDLSSNLFHGTLAPSLIQHLAGGSLTSFNVSNNSFTGQIPTSLLCSNLSSSSSLRFLDYSSNDFVGVIQPGLGACSKLEKFRAGSNFLSGSLPGDIFDVVALTEISLPLNKLSGTIGAGIVNLTNLTVLELYSNNFTGPIPKDIGKLSQLERLLLHANNLTGTLPTSLMDCVNLVMLDIRLNSLEGDLSALNFSGLLKLTALDLGNNSFTGILPPSLYACKSLKALRLASNKFEGQISPDILGLQSLAFLSISTNNLSNVTESLKLLMELKNLSTLMLSQNFFNEMMPNDANITNPDGFQKIQVLGLGGCKFTGQIPRWLVNLKKLEVLDLSYNQISGSIPPWLYTLPELFYIDLSFNRLTGIFPTELTRLPALTSQKAYDKVERTYLELPVFANANNVSQMQYNQISNLPPAIYLGNNSLNGSIPTEIGQLKVLHQLDLSYNKFSGNIPSEISNLINLEKLYLSGNQLSGEIPISLKSLHFLSAFSVAYNDLQGKIPTGGQFDTFPSSSFEGNPQLCGSVVQRSCVPQQATTARDHSSSKKLIIGFIIAACFGTVSFISVLIVWIISKRRINPGGDSDKIELESISANSYSGVHPEVDKEASRVVLFPNKTNEIRELTIFEILKATENFSQANIVGCGGFGLVYKATLPNGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHEGFRLLIYTYMENGSLDYWLHEKADGPSQLDWPTRLKIAQGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDLSKSKMSGELVAWVQQMRSEGKQDQVFDPLLRGKDFEEEMQQVLDVACMCVNENPFKRPSIREVVEWLKNVGSSNQQMNKD 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03219 1011 ProSiteProfiles Leucine-rich repeat profile. 613 636 IPR001611 GO:0005515
Cca03g03219 1011 SUPERFAMILY Protein kinase-like (PK-like) 768 1002 IPR011009 -
Cca03g03219 1011 PRINTS Leucine-rich repeat signature 126 139 - -
Cca03g03219 1011 PRINTS Leucine-rich repeat signature 478 491 - -
Cca03g03219 1011 SMART LRR_sd22_2 478 493 - -
Cca03g03219 1011 SMART LRR_sd22_2 611 632 - -
Cca03g03219 1011 SMART LRR_sd22_2 278 304 - -
Cca03g03219 1011 SMART LRR_sd22_2 98 117 - -
Cca03g03219 1011 SMART LRR_sd22_2 123 149 - -
Cca03g03219 1011 Gene3D Ribonuclease Inhibitor 35 177 IPR032675 -
Cca03g03219 1011 PANTHER OS06G0692500 PROTEIN 16 891 - -
Cca03g03219 1011 PANTHER OS06G0692500 PROTEIN 891 1003 - -
Cca03g03219 1011 PANTHER LEUCINE RICH REPEAT KINASE 2 16 891 - -
Cca03g03219 1011 Gene3D Transferase(Phosphotransferase) domain 1 889 1011 - -
Cca03g03219 1011 Pfam Leucine Rich repeat 124 139 IPR001611 GO:0005515
Cca03g03219 1011 Pfam Protein kinase domain 886 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03219 1011 Gene3D Ribonuclease Inhibitor 346 689 IPR032675 -
Cca03g03219 1011 Pfam Leucine Rich Repeat 613 635 IPR001611 GO:0005515
Cca03g03219 1011 Pfam Leucine Rich Repeat 353 373 IPR001611 GO:0005515
Cca03g03219 1011 Gene3D Ribonuclease Inhibitor 178 251 IPR032675 -
Cca03g03219 1011 Pfam Leucine rich repeat 457 515 IPR001611 GO:0005515
Cca03g03219 1011 PANTHER LEUCINE RICH REPEAT KINASE 2 891 1003 - -
Cca03g03219 1011 ProSitePatterns Protein kinases ATP-binding region signature. 791 814 IPR017441 GO:0005524
Cca03g03219 1011 SMART LRR_typ_2 611 635 IPR003591 -
Cca03g03219 1011 SMART LRR_typ_2 123 146 IPR003591 -
Cca03g03219 1011 SMART LRR_typ_2 478 502 IPR003591 -
Cca03g03219 1011 SMART LRR_typ_2 399 421 IPR003591 -
Cca03g03219 1011 SMART LRR_typ_2 278 301 IPR003591 -
Cca03g03219 1011 SMART LRR_typ_2 98 122 IPR003591 -
Cca03g03219 1011 SMART LRR_typ_2 351 375 IPR003591 -
Cca03g03219 1011 SMART LRR_typ_2 587 610 IPR003591 -
Cca03g03219 1011 SMART LRR_typ_2 425 447 IPR003591 -
Cca03g03219 1011 SMART LRR_typ_2 302 326 IPR003591 -
Cca03g03219 1011 ProSiteProfiles Leucine-rich repeat profile. 480 503 IPR001611 GO:0005515
Cca03g03219 1011 Gene3D Phosphorylase Kinase; domain 1 748 860 - -
Cca03g03219 1011 SUPERFAMILY RNI-like 60 299 - -
Cca03g03219 1011 SUPERFAMILY L domain-like 211 668 - -
Cca03g03219 1011 Pfam Leucine rich repeat N-terminal domain 38 72 IPR013210 -
Cca03g03219 1011 Gene3D Ribonuclease Inhibitor 252 345 IPR032675 -
Cca03g03219 1011 ProSiteProfiles Protein kinase domain profile. 785 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03219 1011 Pfam Protein tyrosine and serine/threonine kinase 789 881 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03219 Cca-Chr3 53579315 53582524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03219 18 725 Miscellaneous Gene Families AT1G17250 51.250 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Cca03g03219 Pkinase 4.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03219 - - gmx:100782574 1577.38