Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03216 ATGGCTTCCGCCTGTGCTTCCTCCGCCATTGCATCTGCTGCCATCTCTACACCAAGCTCCCAGAAGAATGGATCAAGCTTGGGAACCCCAAAAGCTTCTTTTCTTAGTGGGAGGAAATTGAGGATGAACAAATACACAACAGCAGTTGGAGGACGATCCAGCACTACAGTGTGTGCAGTAGCTGACCCTGACAGGCCTCTCTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTTGATGGCACTCTCCCTGGAGACTTTGGCTTTGACCCTCTTGGCCTTGGATCTGATCCGGAGAGTCTGAGATGGAATGTTCAAGCAGAGCTAGTGCACTGCAGATGGGCAATGTTGGGGGCTGCAGGGATTTTCATTCCAGAATTCCTAACAAAGATAGGCATCTTGAACACCCCCTCATGGTACACAGCTGGAGAACTTGAGTACTTCACAGACACCACAACCCTCTTCGTAGTTGAGCTCTTTTTCATTGGGTGGGCCGAGGGCAGAAGATGGGCCGACATAATAAAGCCCGGGTGTGTGAACACTGACCCCATCTTTCCCAACAACAAGCTCACAGGAACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTGACCCACTCGGATGGGGAAGTGGTTCTCCCGAGAAGATAAAGGAGTTGAGAACTAAGGAGATAAAGAATGGGAGATTGGCCATGTTGGCTGTGATGGGTGCTTGGTTCCAGCACATATACACCGGCACTGGTCCTATTGACAACCTCTTTGCCCACCTTGCTGATCCTGGCCATGCTACCATTTTTGCTGCCTTCACCCCCAAGTGA 813 0.5178 MASACASSAIASAAISTPSSQKNGSSLGTPKASFLSGRKLRMNKYTTAVGGRSSTTVCAVADPDRPLWFPGSTPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03216 270 Pfam Chlorophyll A-B binding protein 74 240 IPR022796 -
Cca03g03216 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 270 IPR001344 GO:0009765|GO:0016020
Cca03g03216 270 Gene3D Chlorophyll a/b binding protein domain 75 260 - -
Cca03g03216 270 SUPERFAMILY Chlorophyll a-b binding protein 60 268 - -
Cca03g03216 270 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03216 Cca-Chr3 53556203 53557855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03216 52 270 Chloroplast and Mitochondria Gene Families AT3G61470 90.455 3.49e-148 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03216 K08908 - gmx:100784089 529.25