Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03215 ATGGAGTTGATACAACAAGTTAAAGGCAATTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGCCACAAGAGAAGCTGAAAGCAGCAGCAGGTTACACCAGCACAAATTCGGAAAGCAGCTAGAGTTGATGGAGCTGAGACTTGGGAGCAACAAAGAAGAGGGAGAAGAAGGGAATTCGCAACAAGGAGAAGGAGGAAGTTGTTCGAAGACAAAGGAAGGGGTGGTGGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGCGATGTGGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCTCTCGACTCTTCATCCAACGAGAAGGGGCTTCTCCTCAACTTCGAGGACCGGAACGGGAAGCTGTGGAGGTTCAGGTATTCGTACTGGAACAGCAGCCAGAGCTATGTGATGACAAAGGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTCGACGCCGGCGACATTGTCTCCTTCCAGCGTGGCCTCGGAGACTTGAATAGACAAAGGTTGTACATAGATTGGAAGAGGAGGACTGATCACCCTCATCCTCATGCCCCTGACCCTTCGGCCTCCCCTTTCTTCCTTCCCAATAATATCAGATGGTACTCTCTCCCTCACACCATGCCACCACCTCGCTACAACGATCATCACTTTCACCACAACAACTTCGCTTTTCACCACCCCTACCTTTCTTCCGCCGGTAGGGGtgccactgccactgccactgccactgccactgccacttccactgccactTCCGGTCTTCACGGCAACTACTTTGAGCAGAATTCCGGATCTGGGTCACTCTATTACCTCAGGAACTCCATGGCAATGGGCGGTGATATTCAAAACTTGCAAGGGAGAGGCTTGATCATTGATTCTGTGCCGGTTAACGTTGCTCATCATTGCCATGGCTTTGCACAAGGAAGCATTGTCAGGAGTGGAGCAGGTGGTGGTGATGCTAATACTAGTAGCGGAAAACGGCTGAGGCTATTTGGGGTGAACATGGAATGTGCCTCTTCGGCCGAAGATTCCAAAGCCTTGTCCTCGGGTTCGGCAGCAGCACATGTGACAACAGTAGTGAGTAATTCACTtcttcctcctcctcctcctcctccttcttctcttcAGCGCTTGAGGATGCCACTGCCACCACATGAAGACCCGCTTTCCTTGTCAGCTGCAAGGTTTGGAGATCATCATAAAAGGGGGACTTCCGTGCTCTTTGATTTGGAACCCTCTTTCCAGTTTCGCAAGTGA 1293 0.4756 MELIQQVKGNYSDSREEEEEEEATREAESSSRLHQHKFGKQLELMELRLGSNKEEGEEGNSQQGEGGSCSKTKEGVVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLNRQRLYIDWKRRTDHPHPHAPDPSASPFFLPNNIRWYSLPHTMPPPRYNDHHFHHNNFAFHHPYLSSAGRGATATATATATATSTATSGLHGNYFEQNSGSGSLYYLRNSMAMGGDIQNLQGRGLIIDSVPVNVAHHCHGFAQGSIVRSGAGGGDANTSSGKRLRLFGVNMECASSAEDSKALSSGSAAAHVTTVVSNSLLPPPPPPPSSLQRLRMPLPPHEDPLSLSAARFGDHHKRGTSVLFDLEPSFQFRK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03215 430 MobiDBLite consensus disorder prediction 1 72 - -
Cca03g03215 430 MobiDBLite consensus disorder prediction 372 403 - -
Cca03g03215 430 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 19 363 - -
Cca03g03215 430 ProSiteProfiles B3 DNA-binding domain profile. 84 189 IPR003340 GO:0003677
Cca03g03215 430 MobiDBLite consensus disorder prediction 25 60 - -
Cca03g03215 430 CDD B3_DNA 82 171 IPR003340 GO:0003677
Cca03g03215 430 Pfam B3 DNA binding domain 84 188 IPR003340 GO:0003677
Cca03g03215 430 SUPERFAMILY DNA-binding pseudobarrel domain 81 183 IPR015300 -
Cca03g03215 430 MobiDBLite consensus disorder prediction 375 390 - -
Cca03g03215 430 Gene3D - 77 196 IPR015300 -
Cca03g03215 430 SMART B3_2 84 189 IPR003340 GO:0003677
Cca03g03215 430 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 363 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03215 Cca-Chr3 53540921 53543348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03215 77 353 RAV Transcription Factor Family AT2G46870 50.538 3.13e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca03g03215 B3 1.2e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03215 03 53540921 53543348 Cca03g03215 03 53540921 53543348 ECH