Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03214 ATGGAGGATGGAGGTAGGGTTCCGGCGGGGGATGACCCCTCTTACTGGCTCGATGCTTGTGAGGACATATCGTGTGATTTCATTGATTTTGATGTCTCATCCATCGTGTCCGACCAGCCTGACAACGCTTCCAATCAGGACTTTTTCGGTGGCATTGATAAAATTTTGGACAGCATCAAGAACGGTTCTGGTCTTCCTCTTCATGCTGAATCCAATTCCAACTCTGCTGGAGGACAAGTGTCGTTGCCTAATGATGCCTCCAATGCCACTTTGGAGGGTGGGGAGAATCAtgctcctgctcctgctcctgctcctgctcctgATGCTTCTGTTGCTGCTCAGAGTAACGGCTCTTGCAAGATGACCAATGGGAATGAAGGGGGTGCTTTGGTTAATCATTCTCGGGAAAGAGGGACTCTCACTCTCAATGGAGGCCATGATGTTGATGGTGAAGAGAGGTGTGGCAAAAGGGCTCGGCTTGGTGGCTACAAGAATGAGAGACCTTACTATGGTAGAGGGAATAATTATCAAGGGAAGGAGAGGGAGAGGTGTTTTAACAACAGGAAGAGGCCTAGGGATAGGGATGAGATTGATAGGAGGGATAAGGATGGTGTTAGGAAAAGAGAACATTATGGTAATTGTGGCAAGAGGGATGTTAGAGATAGGGATTGGAGGGATAGAGAAACTAGGGGTTATTGGGAGAGGGATAAGTCAGGTTCCAATGATATGATCTTTCGCCTGGGCGCCTGGGAACCTGATCGTATTCGAGAAGACAAAATGGTGAGTGAGGCAAAACAGGAAAACAATGGAAAGGTTGATAAGAAATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGACAGTATCAGTTGGATGTTCTTGATCAGGCAAAGAAGAAAAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAGAAGCATACAGGAGAGTTTGCAGAAGCTAAATAAGAAAATGCTTGCAGTTTTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGTTATCAAGTGGGCCACTATTGCGGAGAAATGGGGCAGGATTTTTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACACCAAACATGTTTTAGTCATGACCGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTATTGATTCTGGATGAGTGCCACCATGCTGTGAAGAAACACCCATATTCATTGGTGATGTCTGAGTTCTACCATACAACACCCAAAGAGAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTAGTGTCTCCAGCCAAGTAGACTGTGCAATAAAAATTCGTAATCTTGAAAGTAAACTAGATTCTATAGTTTGCACAATTAAAGATCGTAAGGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCTGCCAGTTTATGTTATTTGCATGAGCAGATAAAGCAGATGGAGGTAGAGGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGCGTTTCTGAAAGAACAGAAAGCGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGACAATGGTGTGCATATAAGGTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGACGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTAAGTAAAGTTGTCTCTCTTCTGAAATGCCAACTGTCAGAGGGTGCAGTTTCTGACAAAAATGCTGGCACGGATGACTCAGAGAATGGTGCAGCTCAAAGTGTGTCTGAACATGAAGAGATGGAAGAAGGAGAGCTTCCAGACAGTCACGTTGTCTCTGGCGGAGAGCATGTGGATGTCATTATAGGAGCAGCTGTGGCTGATGGCAAGGTGACCCCGAAGGTGCAGGCACTAATCAAAATACTTCTCAAGTATCAGCATACAGAAGATTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTGCCCAAGGTGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAATAACAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCCAAGTTTCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATACATTCAATCTAGGGGCCGTGCTAGAAAGCCGGGATCTGATTACATCTTGATGGTTGAGAGGGGGAATTTGTCTCATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAGGACAGTTCTAGATTGATTTCTGTTGACACCCGGCCTGGAACAGTGTACCAGGTGAAGTCAACTGGTGCAGTTGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCAAGTGACAGATATTCAATTCTTCGACCAGAGTTTATTATGGAGAAGCATGAAAAATCAGGAGGTCCTACAGAGTATTCTTGCAAGCTTCAGCTGCCGTGTAATGCACCATTTGAAAATCTTGAGGGTCCTATATGCAGTTCTATGCGTTTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGATGAACAAATTGATGAAGGAGATCCACTTCCAGGGACTGCCAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCCTCTCTGGAAAAGATGCTTGCAACAACTCCAAATTGCTTCATCTTTACATGTATGCTGTGAAGTGCGAAAATATAGGCCATTCAAAGGATCCGTTCTTGACTCAAGTTTCAAATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTGACTACAAAGGCATCTCTTGTCTTAAGAGGGCCAATAAATATCACTGAGAGTCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTAGCGATAAGTCTGTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAGAATCCCCTCCAGAAAGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGACAAAAATCGCATCCTACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCGCACAGAGATGCCGAGCAAACACAAAAGCACATCAATATGACTACCAATGGAAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAAAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGACATGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGTTCATATGCTGATTACTACAAGCAAAAGTATGGGGTTGATTTGATTTACAAGCAGCAACCTCTCATAAGAGGCCGTGGTGTATCATACTGCAAGAATCTTCTGTCCCCTCGATTTGAGCACAGTGAAGCACATGAAGGTGAATCTGAAGAGACACATGACAAAACTTATTATGTTTTCCTTCCTCCTGAGCTATGCCTAGTACACCCACTGCCTGGATCACTTGTCCGTGGTGCCCAGAGGTTACCTTCAATAATGAGGAGGATTGAAAGTATGCTACTTGCAGTTCAGCTTAAGAATATGATAAATTTTCCTGTCCAGTCTTTAAAGATATTGGAAGCCTTGACTGCCGCCTCTTGCCAGGAGACATTCTGTTATGAAAGGGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTTGTTAGTCGATTTCTTTTCCTAAAATACCCACAGAAACATGAAGGTCAACTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTTCTGCCTGTCTTTGATGAGGATACCAAGGATGGGGACTCATCTTTGTTTGACCAAGAGCGATCCATTTCTAAGACTGAAAAGATGGATTGTCACACGGATGGATATGAGGATGAGATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTGTCCAGTAAGACACTTGCAGATGTTGTGGAAGCGCTGATTGGGGTATATTATGTAGAAGGCGGTAGGAATGCTGCTAACCACCTTATGAAATGGATTGGCATTCAAATAGAGTTTGATCCCGATGAGATGGAGTGTTCAAGAAAGCCCTTTAATGTTCCAGACAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTGAATATTAAGTTTAAAGACAGGGGGCTGCTGGTAGAATCCATAACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGATTAGAGTTTGTTGGTGATGCCGTCTTGGATCATCTTATTACCAGGCATTTGTTTTTCACTTACACAAATCTGCCACCTGGACGTCTGACTGACCTTCGGGCTGCTGCTGTAAACAATGAAAATTTTGCGCGTGTTGCAGTTAAACACAACCTTCATGTGCATCTCCGGCATGGGTCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCAAAGCCAGGTTTTAACTCCTTTGGTCTGGGAGACTGCAAAGCTCCTAAGGTCCTTGGTGACATTGTTGAATCTATTGCCGGTGCCATTTTCCTTGACAGTGGGAGGGATACTACTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACCCCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGTCAGCAGCAAGCTGAAGGATTAGAGTATAAAGCAAGTCGTATAGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTGCAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCAAGAAATGCTCTTGCTGCATTGAAAGAGAAGGAGGTTGGAAAAACTCAGGAGAAGAATGATGAAAACGGGAAAAAGAATGGAAACCAGACGTTTACTAGACAAACATTAAATGATATCTGTTTACGAAGAAATTGGCCAATGCCATTCTACAGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCTGTGCGTGTCAATACCACTGATAGAGGATGGACGGATGAATGTATTGGGGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAACTACTAAACAAATTATACTCGTGA 5826 0.4348 MEDGGRVPAGDDPSYWLDACEDISCDFIDFDVSSIVSDQPDNASNQDFFGGIDKILDSIKNGSGLPLHAESNSNSAGGQVSLPNDASNATLEGGENHAPAPAPAPAPDASVAAQSNGSCKMTNGNEGGALVNHSRERGTLTLNGGHDVDGEERCGKRARLGGYKNERPYYGRGNNYQGKERERCFNNRKRPRDRDEIDRRDKDGVRKREHYGNCGKRDVRDRDWRDRETRGYWERDKSGSNDMIFRLGAWEPDRIREDKMVSEAKQENNGKVDKKSEEAKERVPEEKARQYQLDVLDQAKKKNTIAFLETGAGKTLIAVLLIRSIQESLQKLNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGSVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNAGTDDSENGAAQSVSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDSSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKSGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKDEQIDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACNNSKLLHLYMYAVKCENIGHSKDPFLTQVSNFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVLRGPINITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVSDKSVDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPHRDAEQTQKHINMTTNGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRIESMLLAVQLKNMINFPVQSLKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQERSISKTEKMDCHTDGYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGRNAANHLMKWIGIQIEFDPDEMECSRKPFNVPDSILRSVDFDALEGALNIKFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKTQEKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKLYS 1941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03214 1941 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 696 857 IPR001650 -
Cca03g03214 1941 MobiDBLite consensus disorder prediction 635 666 - -
Cca03g03214 1941 Gene3D Dicer dimerisation domain 880 981 IPR038248 -
Cca03g03214 1941 Pfam Dicer dimerisation domain 885 973 - -
Cca03g03214 1941 MobiDBLite consensus disorder prediction 1842 1856 - -
Cca03g03214 1941 CDD DEXHc_dicer 287 487 - -
Cca03g03214 1941 SMART helicmild6 726 812 IPR001650 -
Cca03g03214 1941 MobiDBLite consensus disorder prediction 176 218 - -
Cca03g03214 1941 CDD RIBOc 1620 1775 IPR000999 GO:0004525|GO:0006396
Cca03g03214 1941 MobiDBLite consensus disorder prediction 262 284 - -
Cca03g03214 1941 MobiDBLite consensus disorder prediction 635 649 - -
Cca03g03214 1941 Gene3D Ribonuclease III domain 1379 1577 IPR036389 GO:0004525|GO:0006396
Cca03g03214 1941 Gene3D Ribonuclease III domain 1600 1773 IPR036389 GO:0004525|GO:0006396
Cca03g03214 1941 MobiDBLite consensus disorder prediction 111 129 - -
Cca03g03214 1941 Gene3D - 1776 1854 - -
Cca03g03214 1941 Gene3D - 682 849 IPR027417 -
Cca03g03214 1941 ProSiteProfiles PAZ domain profile. 1227 1360 IPR003100 GO:0005515
Cca03g03214 1941 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1778 1841 IPR014720 -
Cca03g03214 1941 CDD SF2_C_dicer 689 820 - -
Cca03g03214 1941 Pfam Type III restriction enzyme, res subunit 294 454 IPR006935 GO:0003677|GO:0005524|GO:0016787
Cca03g03214 1941 MobiDBLite consensus disorder prediction 162 218 - -
Cca03g03214 1941 SUPERFAMILY RNase III domain-like 1376 1581 IPR036389 GO:0004525|GO:0006396
Cca03g03214 1941 CDD DSRM_DCL_plant 1869 1930 - -
Cca03g03214 1941 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 295 472 IPR014001 -
Cca03g03214 1941 SMART DRBM_3 1864 1937 IPR014720 -
Cca03g03214 1941 SMART DRBM_3 1779 1840 IPR014720 -
Cca03g03214 1941 SUPERFAMILY dsRNA-binding domain-like 1734 1860 - -
Cca03g03214 1941 SUPERFAMILY dsRNA-binding domain-like 1867 1937 - -
Cca03g03214 1941 Pfam PAZ domain 1250 1380 IPR003100 GO:0005515
Cca03g03214 1941 Pfam Helicase conserved C-terminal domain 692 810 IPR001650 -
Cca03g03214 1941 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1863 1936 - -
Cca03g03214 1941 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 885 980 IPR005034 GO:0016891
Cca03g03214 1941 CDD RIBOc 1401 1581 IPR000999 GO:0004525|GO:0006396
Cca03g03214 1941 SMART ultradead3 284 488 IPR014001 -
Cca03g03214 1941 SMART PAZ_2_a_3 1228 1384 IPR003100 GO:0005515
Cca03g03214 1941 Gene3D - 282 527 IPR027417 -
Cca03g03214 1941 SMART riboneu5 1619 1775 IPR000999 GO:0004525|GO:0006396
Cca03g03214 1941 SMART riboneu5 1399 1583 IPR000999 GO:0004525|GO:0006396
Cca03g03214 1941 MobiDBLite consensus disorder prediction 971 996 - -
Cca03g03214 1941 Gene3D paz domain 1245 1358 - -
Cca03g03214 1941 Gene3D - 1869 1939 - -
Cca03g03214 1941 ProSiteProfiles Ribonuclease III family domain profile. 1604 1752 IPR000999 GO:0004525|GO:0006396
Cca03g03214 1941 MobiDBLite consensus disorder prediction 650 666 - -
Cca03g03214 1941 MobiDBLite consensus disorder prediction 1842 1862 - -
Cca03g03214 1941 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 249 1939 - -
Cca03g03214 1941 ProSitePatterns Ribonuclease III family signature. 1639 1647 IPR000999 GO:0004525|GO:0006396
Cca03g03214 1941 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1863 1938 IPR014720 -
Cca03g03214 1941 SUPERFAMILY RNase III domain-like 1603 1774 IPR036389 GO:0004525|GO:0006396
Cca03g03214 1941 ProSiteProfiles Ribonuclease III family domain profile. 1403 1563 IPR000999 GO:0004525|GO:0006396
Cca03g03214 1941 MobiDBLite consensus disorder prediction 67 91 - -
Cca03g03214 1941 PANTHER DICER-RELATED 249 1939 - -
Cca03g03214 1941 SUPERFAMILY PAZ domain 1247 1360 IPR036085 GO:0005515
Cca03g03214 1941 Pfam Ribonuclease III domain 1417 1563 IPR000999 GO:0004525|GO:0006396
Cca03g03214 1941 Pfam Ribonuclease III domain 1639 1752 IPR000999 GO:0004525|GO:0006396
Cca03g03214 1941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 824 IPR027417 -
Cca03g03214 1941 MobiDBLite consensus disorder prediction 67 131 - -
Cca03g03214 1941 MobiDBLite consensus disorder prediction 974 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03214 Cca-Chr3 53491884 53504354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03214 708 852 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 7.41e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03214 K11592 - gmx:100811631 3523.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03214 03 53491884 53504354 Cca03g03214 03 53491884 53504354 ECH