Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03212 ATGCTCACAACCTTGGCCACGCTCGCTGAGCACACGGTCCCATATATTATTCTGATACGAAATGTACCCCATTCCTCAGACCAATCGTCTTCTCCTTCTCCAACTTCTATGCCTGATTTCGCCACGTCTTCATCTTTCTCGTTGCAATTTTCAAAGCCTTCTCATCACAACTACACTATTGTTCTTTCACTGGCAATGTCATTGTCTCGTATTGTTGTTTCTGTTCTTCTGGGGCTTCTTGTGTGCTTCCCATTTTCTTGTTCCCTGGAAGAGCAAAGAGAAGTGCCTTTGCTTCCAAACTCTTGCAATGAAACATGTGGGGACCTACATGTTCCCTTTCCATTCTATGTCAACACTTCTTGTGAGTCAATTTCAAGTGCCTTCCATCTCTCGTGCTCAAATTCCTCTGCCCTTTTGCTTAGAATTGGGGCGGTGACCTACAAAGTGTTGGAATTCTTCACAGATGGTGTGCTAGTGGACTTTCCAGGCTCATCTTCATGTAGACAGTACAATGACTTGAATTCTTTTGGAAGAAGTTTTGCAGGGAAGGAGAACTTTGGAGTGTCAGTTGACAATGTTATTGGTCTCTATGACTGTGAGGATTCTTCTCTGTGCAAAGTAGATTGTGAGACTCTTGACTTGCCTGGTTGTGATGGAAGGGGTGGAGGCTCTCTTGCATGCTGCTATCCACTCTCTGACCATTCCATATGGCATGTTGGAGAGGGGTTTTCGGTGTTTTCTCAGTTTGGATGCAGAGGGTTTTCTAGTTGGGCTGTTCTGAGAGGCTCAACTTGGGGAAAACGTGGGGTCAAGTTGGAATGGGCTCTTTCCAGGAACTCTTCTAGGGATGTTTGTGCAAGGAATGCTAACATGGCCAATGCTACAGCGATTGAAGGAGGTGTGAGATGTGTCTGTCAAAATGGATATGTTGGTGATGGTTTTGCTCATGGAACTGGATGTTTGCAGGCCTGCATAAAGGATGGAAGAGAAGCATATGGAAGTGATTGCTACATCAAAAGGCGAGATCAAAGGAAATTTGTTTTGATTGCCGGAGTCATTGGCCCAGTTCTCATTGTTGCCTCTCTGGTTGCACTATTTTATCTTCTTAAAAGGCCAACAAAACCAGGGATGTTTGACACCGAGCAGGCTTACTATCAAAACATTTCAATCCCCAAAGCTTGTAAAACTCGATTATTTAGCCTCCAAGAGCTAGAGGAAGCCACCAAAGGTTTTGAAGAGAGTCAGAAACTTATGCATGGCAATAATGGGACACTTTTTGCTGGAGTTTTAGGGGATGGATCTCGCGTAGCTGTCCACAAGTTACAATGTGAAAAGAAAGACTTGATTCAAGTCCTGTCACAGATCGAGGTTCTATCTGCTACTGTACATAGAAACATGGCTCGCCTTCTTGGATGCTGCATTGAATCTAGCAACACTCTAGCAGTTTATGAGTATCCTTCCAATGGCACTCTGGAGGAACATTTACATCAAAGCAAAGGACAACAACTTCGTTTAGATTGGTATAGGAGATTGACTATTGCTGCAGAAACAGCTAGTGTTCTTGCTTTCTTACACTACGAGAACTCTCCTCCCATATTTCACCATAACCTTAAATCTGCATGTATCTTCCTAGATGATGATTATTCTGTCAAGCTTGCAGGATTTGGTCTGGTCAACTCCAATTTTTACTATGGTTCTCACTTGCATAAGAACTATGAAGGCTATGGCTTCTACAAAAATGATGTTTACGACATGGGTTTATTGCTTCTTGAGATTATCTCAGGCTCAAATCACTTGGATTCACCAACTTTGGCCTTGCAGAAAATAAGGGCTGGAAAATTTGAAGAAATTTTTGACCCATTTCTTTGCTATCATGAACAACCACATCATCGGCAAGAACAAATGCAAATAATTGCAGATCTTGCTACAAGATGCCTGTTATTTGGTGTAGATGGAAGGCTAGGAATGATTGATGTTGTGAGGGAATTGGTGCACTTGACTAAAGAAAGTCTTGATGGAGGAATTATGAAAGGACCTGCACTGGAAGAGACATTCTCGAATTCAAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGAACGTCCCTTGA 2115 0.4265 MLTTLATLAEHTVPYIILIRNVPHSSDQSSSPSPTSMPDFATSSSFSLQFSKPSHHNYTIVLSLAMSLSRIVVSVLLGLLVCFPFSCSLEEQREVPLLPNSCNETCGDLHVPFPFYVNTSCESISSAFHLSCSNSSALLLRIGAVTYKVLEFFTDGVLVDFPGSSSCRQYNDLNSFGRSFAGKENFGVSVDNVIGLYDCEDSSLCKVDCETLDLPGCDGRGGGSLACCYPLSDHSIWHVGEGFSVFSQFGCRGFSSWAVLRGSTWGKRGVKLEWALSRNSSRDVCARNANMANATAIEGGVRCVCQNGYVGDGFAHGTGCLQACIKDGREAYGSDCYIKRRDQRKFVLIAGVIGPVLIVASLVALFYLLKRPTKPGMFDTEQAYYQNISIPKACKTRLFSLQELEEATKGFEESQKLMHGNNGTLFAGVLGDGSRVAVHKLQCEKKDLIQVLSQIEVLSATVHRNMARLLGCCIESSNTLAVYEYPSNGTLEEHLHQSKGQQLRLDWYRRLTIAAETASVLAFLHYENSPPIFHHNLKSACIFLDDDYSVKLAGFGLVNSNFYYGSHLHKNYEGYGFYKNDVYDMGLLLLEIISGSNHLDSPTLALQKIRAGKFEEIFDPFLCYHEQPHHRQEQMQIIADLATRCLLFGVDGRLGMIDVVRELVHLTKESLDGGIMKGPALEETFSNSSLLQMISMSPDSMNVP 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03212 704 Gene3D Phosphorylase Kinase; domain 1 381 485 - -
Cca03g03212 704 ProSiteProfiles Protein kinase domain profile. 411 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03212 704 Gene3D Transferase(Phosphotransferase) domain 1 487 673 - -
Cca03g03212 704 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 111 699 IPR045274 GO:0007166
Cca03g03212 704 Pfam Protein tyrosine and serine/threonine kinase 414 561 IPR001245 GO:0004672|GO:0006468
Cca03g03212 704 SUPERFAMILY Protein kinase-like (PK-like) 393 663 IPR011009 -
Cca03g03212 704 Pfam Wall-associated receptor kinase galacturonan-binding 102 152 IPR025287 GO:0030247
Cca03g03212 704 PANTHER OS10G0351500 PROTEIN 111 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03212 Cca-Chr3 53483446 53486693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03212 102 666 Receptor kinase-like Gene Family AT2G23450 29.412 3.22e-60 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca03g03212 PK_Tyr_Ser-Thr 4.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03212 - - gmx:100810557 1149.42