Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03209 ATGGCGAACCTTTCAGATTTGAAAGAGAAGTGGAAGCAAGTTCCAGAATTGGAAGATGAAGAAAACTTCTCGCATGCTCTGCAGCTTAGCGGCTCCGTTGTGCTTTCCATGGCGCTGCAATCGGCCACGGAGCTTGGCGTATTTGAAGTCTTGAAAAATGCGGGTGAAGGTGCCAAGCTATCTGCGAAGGAAATTGCGTCGCAGCTTTCGTGCAAGAACACAGAGGCACCTTCCATGCTAGATCGTCTTCTCGCCCTTCTTTCCTCTCATTCCATTCTTAATTGTTCCCTCATTCCCGACGATCAAAAACTTGGATCCTTTCACAGGCTCTACACAATCACTCCTGTCGCTAAATTCTTCTCTCCCAATTCTGACGGGGTTTCCTTGGGACCCTTGTTGGCCTTGTTGCAGGATAACATCTTCCTACAAAGCTGGTCGGAGCTGAAAAATGCAATTAAGGAAGGAGGTATTCCATTCAACAGGGTTTATGGCACTCATGCTTTTGAGTATCCAAGTTTAGACTCAAGGTTCAATCAAGTTTTTAATACTGCAATGATCAACCATACCCCTTTGGTGATGAAGAAGGTTCTGGAATGCTACAAAGGTTTTGAGGACATAAAAAGGGTTGTGGACGTTGGTGGTGGTCTTGGGATAAACATAAACTTGATAACTTCCAAGTACCCTCATATAGAGGGTGTCAATTTCGACTTGCCTCATGTCATACAACATGCTCCTTCCTATCCTGGTGTGGAACACGTTGGCGGAGATATGTTTGCAAGTGTGCCTAAAGGAGACGCCATCTTTATGAAGtggatacttcatgattggagtgatgaacattgtttgaagttgttgaagaactgctataatgcaattcccgacgatggaaaggtgattattgtggaggcagtTCTTCCAATCATACCAGAGACTAATGCTGCTTGGAAGGCTATTTCCCAGGTGGATGTTCTGATGATGACTCAAAACCCGGGTGGGAAAGAGCGAACAGAACAAGAATTCATGGAATTGGCAACTGCTGCCGGATTCAGTGGCATCAGGTATGAATGCTATGTTCGTACCTTCTGGGTCATGGAGTTCTTCAAGTAG 1107 0.4137 MANLSDLKEKWKQVPELEDEENFSHALQLSGSVVLSMALQSATELGVFEVLKNAGEGAKLSAKEIASQLSCKNTEAPSMLDRLLALLSSHSILNCSLIPDDQKLGSFHRLYTITPVAKFFSPNSDGVSLGPLLALLQDNIFLQSWSELKNAIKEGGIPFNRVYGTHAFEYPSLDSRFNQVFNTAMINHTPLVMKKVLECYKGFEDIKRVVDVGGGLGININLITSKYPHIEGVNFDLPHVIQHAPSYPGVEHVGGDMFASVPKGDAIFMKWILHDWSDEHCLKLLKNCYNAIPDDGKVIIVEAVLPIIPETNAAWKAISQVDVLMMTQNPGGKERTEQEFMELATAAGFSGIRYECYVRTFWVMEFFK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03209 368 PANTHER O-METHYLTRANSFERASE 18 368 IPR016461 GO:0008168
Cca03g03209 368 PIRSF O-mtase 4 368 IPR016461 GO:0008168
Cca03g03209 368 Gene3D - 4 120 IPR036388 -
Cca03g03209 368 CDD AdoMet_MTases 208 301 - -
Cca03g03209 368 SUPERFAMILY "Winged helix" DNA-binding domain 18 123 IPR036390 -
Cca03g03209 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 368 IPR016461 GO:0008168
Cca03g03209 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 366 IPR029063 -
Cca03g03209 368 Pfam Dimerisation domain 37 87 IPR012967 GO:0046983
Cca03g03209 368 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Cca03g03209 368 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 18 368 - -
Cca03g03209 368 Gene3D Vaccinia Virus protein VP39 122 368 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03209 Cca-Chr3 53451124 53456521 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03209 16 368 Monolignol Biosynthesis Gene Families AT5G54160 53.239 1.02e-140 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03209 K13066 - gmx:100803633 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03209 03 53451124 53456521 Cca03g03209 03 53451124 53456521 ECH