Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03208 ATGGGTTTCCATGTTGAGGCACAGGCGAGGATGCACCAACCTTGCGCAGCTTGCAGGATGTTACGCCGTAGATGTGACAATAACTGCCTACTTGCTCCATATTTCCCGACTCAGGAGCTTCACAAATTTGTTGGGGTGCATAAAGTGTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTTGAGGAAAGAAAGAGAGAGGACGCTGTGAAAGCCATGGTTTACGAGGCGACAGCAAGGCTTAGAGACCCAGTTTATGGCAGTGCTGGGTCTATTTACCAGTTGCAAAAGATGATTCAGGAACTGAAAGCACAACTAGAGTCGATGAAAACTCAGGTATCAGAGCTGCGACAACAAAAAGAACTGTTGTTAAGTATTCATAACAACAATGTTCATAGCCACAATGATCCTTTATTCACCGACAATGACCCAATCTTTGATGGTTACTTTGATCAACTCATGGACTCAGATCCATTTGATTTTCCTGTACAAGTTGGCTGGGGATGTAGCAATACAAATAATATGTCAATGCCTTCCTGCTAG 546 0.4359 MGFHVEAQARMHQPCAACRMLRRRCDNNCLLAPYFPTQELHKFVGVHKVFGASNVIKMIQMVEERKREDAVKAMVYEATARLRDPVYGSAGSIYQLQKMIQELKAQLESMKTQVSELRQQKELLLSIHNNNVHSHNDPLFTDNDPIFDGYFDQLMDSDPFDFPVQVGWGCSNTNNMSMPSC 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03208 181 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Cca03g03208 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 6 157 - -
Cca03g03208 181 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Cca03g03208 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 157 - -
Cca03g03208 181 Coils Coil 93 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03208 Cca-Chr3 53448352 53449227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03208 14 130 AS2 family AT2G28500 52.991 5.68e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca03g03208 LOB 4.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03208 - - ccaj:109796546 377.096