Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03207 ATGGCTCCTCCGATAGAATCAAACACAAAACATGCCAATGGGAGACGCGAGTATGAAGAAGAAGATGATGAGCTTGCGTTTTGCATGGAAAAGATGGTTGCGTTTGTGGTTCCAATGGCTTTGAGGACTTCGTTCGAGCTTGGCATATTTGACATCCTGGGCAAAGCCGGTGAAGGTGCCAAACTCTCTGCAAAAGAGATTGCACTTGAGATTGGGAGCAACAACCCCCAAGCTCCTGCAATGCTCGATCGTCTTCTTTGCCTTTTGGTTAGTCACTCTTTGTTATCTTGCTCTGTTTCTCAACAACCACCACATCAGAGGCTCTTCTCCCTCGCCCGTGGCTCCAAATATCTTGTTACTGATCCTCACGGTGTATCATTGGGATCCTCCCTCACATTGCTTCTCGATGAGGTCTTCTACAAAAGTTGGAGCGAATTAAAAGGATCAATACTAGAAGGGGGTGTGGCATTCGATAGGGCTCATGGCATGCATGCCTTTGAATATCCAAGCGTGGACCCCAGGTTTAATGATGTTTTCAACAAAGGGATGACAGGCATCACCACTCAAATTATGAAGAGGATTCTTGAATTATACAAAGGTTTTGAGCATGTCACGAAGCTGGTGGACGTTGGTGGAGGACTTGGGGTCAATCTCAAATTGATCACATCCAAATACCCTCATATTCAGGCTATTAATTTTGACTTGCCTCATGTCGTACAACATGCCCCCGACTATGCTGGTGTCGAGTTTGTGGGAGGAGATATGTTTCTGAGCGTTCCTTCTGGAGATGCCATTTTTATGAAGtggatacttcacgattggagtgatgaacattgcttgaagctgttgaagaattgctactcggctattccagaagatggaaagGTTATAGTGGTGGACTCAATTGTGTCGATTGTGCCCGAGACAACAGCTACTGCGAAGGGAGCTTTGGGATCTGACCTCGTAATGATGACCCAAAATCCAGGAGGAAAAGAGAGGACCCGCCAAGAATTCATTGAATTAGCAGAAGGATCTGGATTTAGCGGGGTCACATTCATATGCTGTGTATGTGGCTACTGGGTTATGGAGTTCTACAAGtag 1101 0.4251 MAPPIESNTKHANGRREYEEEDDELAFCMEKMVAFVVPMALRTSFELGIFDILGKAGEGAKLSAKEIALEIGSNNPQAPAMLDRLLCLLVSHSLLSCSVSQQPPHQRLFSLARGSKYLVTDPHGVSLGSSLTLLLDEVFYKSWSELKGSILEGGVAFDRAHGMHAFEYPSVDPRFNDVFNKGMTGITTQIMKRILELYKGFEHVTKLVDVGGGLGVNLKLITSKYPHIQAINFDLPHVVQHAPDYAGVEFVGGDMFLSVPSGDAIFMKWILHDWSDEHCLKLLKNCYSAIPEDGKVIVVDSIVSIVPETTATAKGALGSDLVMMTQNPGGKERTRQEFIELAEGSGFSGVTFICCVCGYWVMEFYK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03207 366 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 366 - -
Cca03g03207 366 Pfam O-methyltransferase domain 143 348 IPR001077 GO:0008171
Cca03g03207 366 SUPERFAMILY "Winged helix" DNA-binding domain 19 121 IPR036390 -
Cca03g03207 366 PIRSF O-mtase 5 366 IPR016461 GO:0008168
Cca03g03207 366 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Cca03g03207 366 PANTHER O-METHYLTRANSFERASE 1 366 IPR016461 GO:0008168
Cca03g03207 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 365 IPR029063 -
Cca03g03207 366 Gene3D Vaccinia Virus protein VP39 120 366 IPR029063 -
Cca03g03207 366 Gene3D - 6 118 IPR036388 -
Cca03g03207 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 366 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03207 Cca-Chr3 53438625 53440357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03207 22 366 Monolignol Biosynthesis Gene Families AT5G54160 50.575 1.69e-126 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03207 K13066 - gmx:100789402 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03207 03 53438625 53440357 Cca03g03207 03 53438625 53440357 ECH