Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03205 ATGCCATTCCTGCAGATGCTTCAGAGTGCAGAATCATCACAATTTATCCCTTTCAAGGAACCGGGCTTTGAGACACTAATGAGACTGAAGAAGCCAAGGGAAGGGATGAGATTGGTGGAAGTTGAGAGTTGCGTTACCCATGATGTGGTGGAAGCGCAGTCAAGCAATGAACTTCAACATGTGCATTCAGCTTGGGGTGTTGAGAAAGTGAGTAATGAGTGCAATAAAGGTGAAGACCGCAACAAAGATGCTAAAACTGAGGTTGCTGCaagggaaaggagaaagagaaggagaacgagaCAAAGAAAAAACAAGGAAGAAGTTGAGAAGCAGCGCATGACTCACATTGCAGTGGAACGCAACAGGCGACGCCAAATGAATGACCATCTCTGTGTGCTCAAATCACTCATGCCCCTTTCCTATATTCAGAGGGGTGACCATGCGTCAATCATTGGAGGTGCAATAGATTTTGTGAAGGAATTGGAGCAGTTACTTCAATCCCTGGAGGCCCAAAAGAGGGTGAGAAAGAACGAAGAGGTTGGCTCCACCACCGGAATGTTTGAAGAACAAGTAAAGTGTGGGGATGAGTTTAAGGCAGAAAAGAAGTCAGAGTCAGTAGCAGTAGAGGTGACTGTGATTCAAGCTCATGTGAACTTGAAAATTCAGTGCTTAAGGAGACATGGGCAATTGATAAAGGCTATTGTTGCCTTTGAGGATCTTAAGCTAACTATTCTGCATCTTAACATAACATCCTCGGAGGCTACAGTTCTCTACTCCTTCAATCTCAAGATTGAAGAAGACACTAAAGTAGTCTCAGCAAGTGAAATTGCAGAAGCAGTTGATCACATGTTTAGATCCATTAATGATAGCTGA 873 0.4227 MPFLQMLQSAESSQFIPFKEPGFETLMRLKKPREGMRLVEVESCVTHDVVEAQSSNELQHVHSAWGVEKVSNECNKGEDRNKDAKTEVAARERRKRRRTRQRKNKEEVEKQRMTHIAVERNRRRQMNDHLCVLKSLMPLSYIQRGDHASIIGGAIDFVKELEQLLQSLEAQKRVRKNEEVGSTTGMFEEQVKCGDEFKAEKKSESVAVEVTVIQAHVNLKIQCLRRHGQLIKAIVAFEDLKLTILHLNITSSEATVLYSFNLKIEEDTKVVSASEIAEAVDHMFRSINDS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03205 290 MobiDBLite consensus disorder prediction 73 112 - -
Cca03g03205 290 Coils Coil 158 178 - -
Cca03g03205 290 CDD bHLH_AtFAMA_like 113 183 - -
Cca03g03205 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 161 IPR011598 GO:0046983
Cca03g03205 290 MobiDBLite consensus disorder prediction 73 90 - -
Cca03g03205 290 SMART finulus 116 167 IPR011598 GO:0046983
Cca03g03205 290 Coils Coil 67 87 - -
Cca03g03205 290 Gene3D - 99 178 IPR036638 GO:0046983
Cca03g03205 290 PANTHER TRANSCRIPTION FACTOR BHLH70 1 289 - -
Cca03g03205 290 Pfam Helix-loop-helix DNA-binding domain 111 162 IPR011598 GO:0046983
Cca03g03205 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 178 IPR036638 GO:0046983
Cca03g03205 290 Coils Coil 89 111 - -
Cca03g03205 290 PANTHER MAX DIMERIZATION, MAD 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03205 Cca-Chr3 53424172 53427724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03205 1 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 45.307 4.06e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g03205 HLH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03205 - - aprc:113862094 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03205 03 53424172 53427724 Cca03g03205 03 53424172 53427724 ECH