Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03203 ATGGGTGAAGTGATGCAGACGCAGGGGGAACAGAGCAACAATGCCTCGGCGGTTCGGTGGGAACGCTTTCTGCCTCGGATGGTGCTTAGGGTGTTGCTTGTCGAAGCTGATGATTCCACACGACAGATCATTGCTGCACTTCTCCGTAAATGCAGTTACAAAGTTGCCACAGTTCGTGATGGCTTAAAAGCATGGGAGACATTGAAGGACAAAGCATCTGATATAGATCTCATATTAACAGAAGTCGATTTGCCATCAATATCTGGATTTTCACTTCTTACTTTAATCATGGAGCATGACATTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCATGATTCAGTTAGCATGGTGTTCAAGTGCATGTTAAAAGGGGCTTCTGATTTTCTTATAAAACCTGTCCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTATGGAGAAGGCATGCTATTAGCGGGCCTCCGCAGAATTTAACACTGCCACAGATTGAACTTGGTGTTGCTGCAGAAAACGATGCTGCAAGCACTGATTCAAGTGGTTCTGTGGCTTCTACACCAAAAAATAACGAATGCAGCGAGGAAACAAGTGAGGCTCAAGATATATCGCAGCTAAAGAGCTCTTCAAATTTGAGCAATATTGACACAGTGAACCATGAAAACTCTACCAAATGTGAAAGGGATTCAGATAAATATAATGACGAAGCTGGAGAGAAATCAATATTTATATCAGAAGCTGCAAGGTGCAACAGAACTTTTAAACCAACAGGTTTAAGGGTTGGTCGAGGCTACGATTTTCATGAAAAGAAAAATCAAGATGAAGTTCTAAGAATAGAGTTGAGCAAAGCCAATCCTCAGATTAATACAGATATACATGAATGCAGTGATGAACTGGTAGATCCTTCTACTGGTGCTATTGATTTGATTGCTACATTCAAGAATCTTCCAAACAGAACTGATGAAAAATGTAGTGGTAACACTGCCAAGTTTGATTTCGATACACAATTGGAACTTTCTTTAAGACAAGATTTTCCTGGAAGCTCATGTAAAGCTGCATCTGAGGAAAGGCAAATATTGAATCATTCTAACGTGTCTGCTTTTTCTCGGTACAGTAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAACACCATCTACTATCTCTGATAAATTAACAAATGCCAGTCAGAATTCTCATGAATCCCATAAATTATCCGAAAATGCATATACTTCTCTTCAATACGGAGGAAAAAATCAAAATCAGGAGAAATTCATCACTCTGGTCATTGGTCAGTCTGGACAAGCTGATCCAAAATTACAAAACAGTCAACTTGGATCGTTTCCTGCTACTGGGGTTACTTCTGATCACAAGTCTATGGAAAACAGTAATGTTTTCCCTTCTATGCTTTATGCACAATCAGTTGTCAATCATCCCATACGGACTCCAAAATCAGTGTGCCAGAAAGAGAGTTCTCCATTTCCCACAAGTACTTCCTCCCAGTCAAATACTCTAAGTCACAATTCAGAACGTCATCACTGGTCAGACGATGCAACCCATGTTTCTGATCAAAATGTAAACGATCAAAGCAATTTGGATTGTGAGACACATGACTCTTCTGCTGCTGGTCAGTGTGCTGATACATCAAATCATAATAGTAATGGTGTATACAGAAGCATAGGTTGCAAAAGAGACGGAAATGCTACTTCAGCTAAGGTAGTTGGGGACAGCCATGAAAGTTTTATTGATAGTGGTCACCGTAGTTATGATGGATTCTTAGGGACAGATTCTCATCGCACCAGCCAACGTGAAGCAGCTCTAACAAAGTTTCGGCTGAAGCGGAAAGACAGATGCTATGAGAAAAAGGTGCGATATCAAAGCCGGAAGAGACTGGCAGAGCAGCGTCCTCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACACAATGATCATCCAGTAGCAGATGCGGGTGGTGGTTCCTGA 1977 0.4138 MGEVMQTQGEQSNNASAVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVATVRDGLKAWETLKDKASDIDLILTEVDLPSISGFSLLTLIMEHDICKNIPVIMMSSHDSVSMVFKCMLKGASDFLIKPVRKNELRNLWQHVWRRHAISGPPQNLTLPQIELGVAAENDAASTDSSGSVASTPKNNECSEETSEAQDISQLKSSSNLSNIDTVNHENSTKCERDSDKYNDEAGEKSIFISEAARCNRTFKPTGLRVGRGYDFHEKKNQDEVLRIELSKANPQINTDIHECSDELVDPSTGAIDLIATFKNLPNRTDEKCSGNTAKFDFDTQLELSLRQDFPGSSCKAASEERQILNHSNVSAFSRYSSSKLLQPLFPTPSTISDKLTNASQNSHESHKLSENAYTSLQYGGKNQNQEKFITLVIGQSGQADPKLQNSQLGSFPATGVTSDHKSMENSNVFPSMLYAQSVVNHPIRTPKSVCQKESSPFPTSTSSQSNTLSHNSERHHWSDDATHVSDQNVNDQSNLDCETHDSSAAGQCADTSNHNSNGVYRSIGCKRDGNATSAKVVGDSHESFIDSGHRSYDGFLGTDSHRTSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPVADAGGGS 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03203 658 Pfam Response regulator receiver domain 31 142 IPR001789 GO:0000160
Cca03g03203 658 MobiDBLite consensus disorder prediction 483 549 - -
Cca03g03203 658 Pfam CCT motif 602 644 IPR010402 GO:0005515
Cca03g03203 658 SMART REC_2 29 144 IPR001789 GO:0000160
Cca03g03203 658 MobiDBLite consensus disorder prediction 483 507 - -
Cca03g03203 658 MobiDBLite consensus disorder prediction 176 232 - -
Cca03g03203 658 PANTHER TWO-COMPONENT RESPONSE REGULATOR 200 654 IPR045279 GO:0009736
Cca03g03203 658 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 197 IPR045279 GO:0009736
Cca03g03203 658 MobiDBLite consensus disorder prediction 176 220 - -
Cca03g03203 658 MobiDBLite consensus disorder prediction 519 549 - -
Cca03g03203 658 MobiDBLite consensus disorder prediction 439 459 - -
Cca03g03203 658 ProSiteProfiles Response regulatory domain profile. 30 148 IPR001789 GO:0000160
Cca03g03203 658 PANTHER PRR RESPONSE REGULATOR 200 654 - -
Cca03g03203 658 PANTHER PRR RESPONSE REGULATOR 19 197 - -
Cca03g03203 658 MobiDBLite consensus disorder prediction 628 658 - -
Cca03g03203 658 SUPERFAMILY CheY-like 29 156 IPR011006 -
Cca03g03203 658 ProSiteProfiles CCT domain profile. 602 644 IPR010402 GO:0005515
Cca03g03203 658 MobiDBLite consensus disorder prediction 628 643 - -
Cca03g03203 658 CDD psREC_PRR 31 134 - -
Cca03g03203 658 Gene3D - 27 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03203 Cca-Chr3 53409665 53414304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03203 567 646 Response Regulator Gene Family AT5G24470 59.756 1.38e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Cca03g03203 Response_reg 5.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03203 K12130 - gmx:100809490 1080.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03203 03 53409665 53414304 Cca03g03203 03 53409665 53414304 ECH
Cca11g00517 11 7316589 7321209 Cca03g03203 03 53409665 53414304 ECH