Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03200 ATGGCAGCTCTTTCTCTCGCATTCACTTCTTCATCTTTACTCAACCAAAACCCTCAATTCCGACCTCCCAAACCATTCCTTTCCTCTTGTCTGTCTTTTGTCGCAGGGTGCACCTCTAAGGCTAGGGCTTTCACTGCCTTGGCGGCGCCGGTGGATGAAGAAACGGTGGAGGAAGAAACATGGAAGCAGCCAAGACCCACCGAAGTCTACGTCTGCAACCTTCCAAGAAGCTGTGACACAGAACAACTGCTTCATATCTTCAACCCTCACGGAACTGTTCTGTCTGCAGAGATTTGCCGGAGTGAGGAGACGGGTGAAAGTAGAGGGAGTGCTTATGTCACAATGGCATCTATTAACTCCGCAAAGAATGCAATTGCTGCATTGGATGGATCGGATGTTGGTGGGCGCGAAATGCGGGTTAGATTTTCTGCTGAGATGAATCCTAACAGGAGGAATCTTGATACAATGAACTCATCACCCAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAAGGCTGCTAGGCCTGAAGACTTGAGACAACTTTTCGGTAGATTTGGTAACGTGGCTAGTGTAAGGGTGTTGCATGATTTGAGACAAGGGAAGCGCAGGTTCTATGCGTTTGTCTCTTATCTTTCAGAGAGAGAACGTGATACAGCAATGTCCCTCAACGGAACAGTAAAATCTGCATCTGCCACTTTCTATTGTTGTGCTTCTTATTTCATTGCTTGTGTTTGA 759 0.4625 MAALSLAFTSSSLLNQNPQFRPPKPFLSSCLSFVAGCTSKARAFTALAAPVDEETVEEETWKQPRPTEVYVCNLPRSCDTEQLLHIFNPHGTVLSAEICRSEETGESRGSAYVTMASINSAKNAIAALDGSDVGGREMRVRFSAEMNPNRRNLDTMNSSPKRVIYYEGPHKLYVGNLSKAARPEDLRQLFGRFGNVASVRVLHDLRQGKRRFYAFVSYLSERERDTAMSLNGTVKSASATFYCCASYFIACV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03200 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 139 IPR000504 GO:0003723
Cca03g03200 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 233 IPR000504 GO:0003723
Cca03g03200 252 SUPERFAMILY RNA-binding domain, RBD 64 162 IPR035979 GO:0003676
Cca03g03200 252 CDD RRM_SF 172 234 - -
Cca03g03200 252 Gene3D - 39 154 IPR012677 -
Cca03g03200 252 SMART rrm1_1 68 141 IPR000504 GO:0003723
Cca03g03200 252 SMART rrm1_1 171 244 IPR000504 GO:0003723
Cca03g03200 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Cca03g03200 252 Gene3D - 157 236 IPR012677 -
Cca03g03200 252 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 53 235 - -
Cca03g03200 252 PANTHER OS02G0815200 PROTEIN 53 235 - -
Cca03g03200 252 SUPERFAMILY RNA-binding domain, RBD 168 233 IPR035979 GO:0003676
Cca03g03200 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 233 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03200 Cca-Chr3 53398974 53401191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03200 53 245 Eukaryotic Initiation Factors Gene Family AT1G22760 27.551 2.67e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03200 - - gsj:114400287 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03200 03 53398974 53401191 Cca03g03200 03 53398974 53401191 ECH