Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03197 ATGTCGGTTGGAGAAGTTGCTTGTTCATACGCTGCTCTCATCCTTCACGAAGATGGAATTGGCATCACTGCCGATAAGATCGTTGCTTTGCTGAAGACTGCAAAGGTTGAAGTTGATTCTTATTGGCCCACCTTATTTGCCAAACTCGCCGAAAAGAAAAATCTTGGCGATTTGATAGCAAATGCTGCGGGAGGTGGGGCACCAgctgctgttgcagtcgccccagttgctgcttcaggtggtggtgctgccgcagctgctccagctgctgAGGAGAAGAAAAAGGAAGAGCCTGAAGAGGAGAGTGACGATGATATGGGATTCGGCTTGTTCGATTAA 339 0.3687 MSVGEVACSYAALILHEDGIGITADKIVALLKTAKVEVDSYWPTLFAKLAEKKNLGDLIANAAGGGAPAAVAVAPVAASGGGAAAAAPAAEEKKKEEPEEESDDDMGFGLFD 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03197 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Cca03g03197 112 CDD Ribosomal_P1 5 111 - -
Cca03g03197 112 Gene3D - 1 62 IPR038716 -
Cca03g03197 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 105 - -
Cca03g03197 112 MobiDBLite consensus disorder prediction 97 112 - -
Cca03g03197 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 105 - -
Cca03g03197 112 MobiDBLite consensus disorder prediction 85 112 - -
Cca03g03197 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03197 Cca-Chr3 53373235 53374721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03197 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 55.263 6.72e-37 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03197 K02942 - gmx:100791962 136.732