Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03191 ATGTCAGAAGGTGCAGAAATCGATGAGCGTGTGGACCTCGATGAGGAAAATTATATGGAAGAGATGGATGACGATGTTGAAGAACAAATAGATGACGACGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGCTGAAGAGCATGAATATGAGGATTCAGCAGCTGAGGCTGGTGGGAAAGATCAACTGCTTAAAGCAGAAAAAAGTGACATTGCCACTGAATTTGGTGATGATGAGCAAAAACCATCTTTGTTTGATGAGGATGAGAAGGAGAAGCATGATGAACTTCTTGCCCTTCCACCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGAATTGTGCGAGCCAATGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGACACTGGAGAAAACAAGGGTTATGCCTTTGTGGCCTTTAAAACAAAAGAGGTAGCGCAAAGAGCTATTGAAGAGATACATAACAAGGAATTTAAGGGAAAAACTTTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACATGGACTGAAGATGAGTTTAGGAAAGTTGTTGAAGGTGTTGGTCCTGGAGTTGAAAACATTGAGCTCATTAAGgaccctcaaaatccaagtaggaatcgtgggtttgcttttgttttgtattacaataatgcatgtgctgattattctcggcaaaagatggcaagtgggagttttaagttggatggtaataccccaactgtcacatgggcagatccaaagaactcacctgatcattctgcttcttcacagGTTAAAGCTCTATATGTCAAAAACATACCAGAGAATGTTACCACTGAACAACTAAAGGAATTATTCCGCCGTCATGGAGAAGTAACTAAAGTGGTCATGCCGCCTGGCAAAGCTGGAGGGAAACGCGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACAGAGAAATATGAAATTGATGGCCAAGTGCTTGAAGTTGTTCTTGCTAAGCCTCAAACTGATAAAAAACCTGATGGAGGTTATGCCTACAATCCTGGAGTTCATCCAAATCATCTTCCACATCCTGCATACGGCAACTTTTCTGGAAACCCTTACGGCTCTTTAGGGGCTGGATATGGTGTTGCTGGTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCTGGAATGCAAATGGTTCCAATGGTGTTACCAGATGGTCGAATTGGCTATGTCCTTCAGCAACCTGGTGTACAGGTGCCACCTTCCCGACCCCGTAGAATTGATCGGAGCAATGGTCCAAGTGGGCAGCCAGGGCGAGGAGGAGGAGGAGACTTTGGGAACCAGGGACGTGTAATCCATTTGCTATGCATTGACAGGAAATCCCTTCACAATCCCTATCCCTATCCCATAAAAAGGGGGAGAAAAGAGAAATTTTAA 1509 0.3824 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSAEEHEYEDSAAEAGGKDQLLKAEKSDIATEFGDDEQKPSLFDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQRAIEEIHNKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDEFRKVVEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASGSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQVLEVVLAKPQTDKKPDGGYAYNPGVHPNHLPHPAYGNFSGNPYGSLGAGYGVAGGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPPSRPRRIDRSNGPSGQPGRGGGGDFGNQGRVIHLLCIDRKSLHNPYPYPIKRGRKEKF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03191 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Cca03g03191 502 SUPERFAMILY RNA-binding domain, RBD 275 373 IPR035979 GO:0003676
Cca03g03191 502 MobiDBLite consensus disorder prediction 49 85 - -
Cca03g03191 502 SMART rrm2_1 107 180 IPR003954 GO:0003676
Cca03g03191 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Cca03g03191 502 SMART rrm1_1 107 180 IPR000504 GO:0003723
Cca03g03191 502 SMART rrm1_1 282 354 IPR000504 GO:0003723
Cca03g03191 502 SMART rrm1_1 187 264 IPR000504 GO:0003723
Cca03g03191 502 CDD RRM3_hnRNPR_like 280 358 - -
Cca03g03191 502 Gene3D - 8 186 IPR012677 -
Cca03g03191 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Cca03g03191 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 250 IPR000504 GO:0003723
Cca03g03191 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Cca03g03191 502 Gene3D - 269 400 IPR012677 -
Cca03g03191 502 Gene3D - 187 267 IPR012677 -
Cca03g03191 502 CDD RRM_SF 108 180 - -
Cca03g03191 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Cca03g03191 502 PANTHER GEO13361P1-RELATED 2 474 - -
Cca03g03191 502 MobiDBLite consensus disorder prediction 1 85 - -
Cca03g03191 502 MobiDBLite consensus disorder prediction 8 48 - -
Cca03g03191 502 MobiDBLite consensus disorder prediction 439 470 - -
Cca03g03191 502 SUPERFAMILY RNA-binding domain, RBD 103 271 IPR035979 GO:0003676
Cca03g03191 502 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03191 Cca-Chr3 53330009 53335188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03191 108 434 Eukaryotic Initiation Factors Gene Family AT1G71770 25.916 8.11e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03191 K13161 - gmx:100790907 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03191 03 53330009 53335188 Cca03g03191 03 53330009 53335188 ECH