Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03188 ATGAGCGTCAAAGTAGCAACAGGTCGTATCCGGGTTGGGAAATACGAATTGGGTAAAACTATTGGAGAAGGAAGCTTTGCCAAGGTCAAGTTCGCCAGGGATGTCGACAACGGCAACCACGTTGCCATCAAAATCCTCGACCGTAAACATGTTCTCCGCCACAACATGACGGAACAGCTGATGAGAGAAATATCAACGATGAAGCTAATCAATCACCCAAACGTTATTAAAATATTTGAGGTGATGGCAAGCAAAACAAAGATTTTCATTGTCCTGGAGTTAGTTAACGGGGGAGAACTATTTGACAAAATAGCTTCAAATGGGAGACTTAAAGAAGATGAAGCAAGAAATTATTTCCAACAACTTATTAATGCTGTTGACTACTGTCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCAAATAGTGTTCTTAAAGTTTCAGATTTTGGATTGAGTACATACTCACAGAAAGAGGATGAACTACTCCGCACCGCATGTGGAACCCCGAATTATGTTGCTCCTGAGGTGCTTAAAGATAGAGGTTATGTTGGTTCTACATCTGATATCTGGTCTTGTGGAGTCATTCTCTTTGTACTTATGGCTGGTTACTTGCCTTTTGATGAGCCAACTCATATGGCTCTGTACAGGAAAATTGGCATGGCAAAATTCTCTTGTCCATCATGGTTTCCGCCACAGGCAAAGAAACTGCTGAAACGCATTCTTGATCCAAACCCTCTAACGGTTTGCTTTAAACTTTTGCTTGAAAGGATAAAAATTCCTGAGCTCTTAGAAGATGAATGGTTCAAGAAAGGATACAAGCAAGCATCATTTACTGAGGAAGAGGACCTAAGTGTAGAGGATGTAGCCGTTGCTTTCAATGTGTCTAATGAAAATCTAGTGACAGAGAGAAAAGAGAAACCCGTCTACATGAATGCTTTTGAGCTAATTTCTGGTTCACAAAGTTTCAATCTCGACAGTTTGTTTGAGAAGCAAAAGGATCAAGTAAAGCGAGAAACCCGATTTACTTCACAGTGCCCTGCAAATGAAATTATGTTTAAAATCGAGGAAGCAGCGAAGCCACTGGGCTTTAATGTACAGAAGCAAAATTATAAGATGAAGCTGCAAGGTGACAAGAGCGGGAGGAAGGGTCACCTTTCAGTGGCTACTGAGGTTTTTGAAGTGGCTCCCTCCTTGCACATGGTGGAGCTGCGAAAGACAAGGGGTGATACACTGGAGTTTAATAAGTTCTACAAAATCTTCTCATCAGGGTTGCAAGACATAGTCTGGCATACTGAACCAAAAAAATGA 1332 0.4137 MSVKVATGRIRVGKYELGKTIGEGSFAKVKFARDVDNGNHVAIKILDRKHVLRHNMTEQLMREISTMKLINHPNVIKIFEVMASKTKIFIVLELVNGGELFDKIASNGRLKEDEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNSVLKVSDFGLSTYSQKEDELLRTACGTPNYVAPEVLKDRGYVGSTSDIWSCGVILFVLMAGYLPFDEPTHMALYRKIGMAKFSCPSWFPPQAKKLLKRILDPNPLTVCFKLLLERIKIPELLEDEWFKKGYKQASFTEEEDLSVEDVAVAFNVSNENLVTERKEKPVYMNAFELISGSQSFNLDSLFEKQKDQVKRETRFTSQCPANEIMFKIEEAAKPLGFNVQKQNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTRGDTLEFNKFYKIFSSGLQDIVWHTEPKK 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03188 443 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Cca03g03188 443 Pfam NAF domain 315 375 IPR004041 GO:0007165
Cca03g03188 443 CDD CIPK_C 319 426 - -
Cca03g03188 443 ProSiteProfiles Protein kinase domain profile. 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03188 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 9 440 - -
Cca03g03188 443 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Cca03g03188 443 Pfam Protein kinase domain 15 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03188 443 SMART serkin_6 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03188 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Cca03g03188 443 SUPERFAMILY Protein kinase-like (PK-like) 11 291 IPR011009 -
Cca03g03188 443 PANTHER - 9 440 - -
Cca03g03188 443 Gene3D Transferase(Phosphotransferase) domain 1 95 305 - -
Cca03g03188 443 Gene3D Kinase associated domain 1, KA1 312 438 - -
Cca03g03188 443 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03188 Cca-Chr3 53304437 53308531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03188 9 440 CBL-interacting serine-threonine protein kinases AT1G01140 71.526 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca03g03188 Pkinase 3.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03188 - - gmx:100777218 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03188 03 53304437 53308531 Cca03g03188 03 53304437 53308531 ECH