Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03182 ATGTCAAATCATATGGAATATTCTCATTCATCAGAAGCAGACACGAGAAAGAGTAGGAGTAATAAGAAAAGAAGGTTCAATGATGAACAAATAAAATCATTGAAATCCATGTTTGAGAGAGACTCAAGGCTGGAACCGTCGAAGAAATTGCAGGTGGCAAAAGAGCTTGGTTTGCAACCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTCGATGGAAGTCAAAGAAGCTTCAGCGAGACTACACCATACTTCGAGCCAATTATAACTCTTTGGCTTCCCACTTTGATCTTCTCAACAAGGAGCATCAAGCATTGCTAATTCAGTTGCAGGAGCTGAATGATGAAATACACAAGTCACTAGAACATGCTGAAAGTTGTACAACAGGAAAGAAGATGGAGAGTGAGAGAGAAAATGGAGACATGATGAAAAGTGAACAAGAGGTAAAGCAGTCAAAAAGATCAGAAGACAATATTGTTGGTAGTGTTAACGTTCTCTCTGAGGATGACAGCGGCATAAAGGCAGAACAACACTTTGGAGTGGAAGATGAACCTGCCGCTGTGAATGTTGTTCACCATGCTATTGCTGCTGAGGATTGGTGTGTGTTTGACTATGATGATATCTTAGGCCAATCAACCAGCTCCGATTATCAATGGTGGGACTTCTACTCCTGA 678 0.4115 MSNHMEYSHSSEADTRKSRSNKKRRFNDEQIKSLKSMFERDSRLEPSKKLQVAKELGLQPRQVAIWFQNKRARWKSKKLQRDYTILRANYNSLASHFDLLNKEHQALLIQLQELNDEIHKSLEHAESCTTGKKMESERENGDMMKSEQEVKQSKRSEDNIVGSVNVLSEDDSGIKAEQHFGVEDEPAAVNVVHHAIAAEDWCVFDYDDILGQSTSSDYQWWDFYS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03182 225 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Cca03g03182 225 SMART HOX_1 20 81 IPR001356 GO:0003677
Cca03g03182 225 MobiDBLite consensus disorder prediction 1 42 - -
Cca03g03182 225 MobiDBLite consensus disorder prediction 126 156 - -
Cca03g03182 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 224 IPR045224 GO:0003700
Cca03g03182 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 11 224 - -
Cca03g03182 225 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Cca03g03182 225 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Cca03g03182 225 SUPERFAMILY Homeodomain-like 7 78 IPR009057 -
Cca03g03182 225 Pfam Homeodomain 22 75 IPR001356 GO:0003677
Cca03g03182 225 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Cca03g03182 225 CDD homeodomain 22 78 IPR001356 GO:0003677
Cca03g03182 225 Coils Coil 97 117 - -
Cca03g03182 225 MobiDBLite consensus disorder prediction 9 42 - -
Cca03g03182 225 Pfam Homeobox associated leucine zipper 77 117 IPR003106 GO:0006355|GO:0043565
Cca03g03182 225 Gene3D - 4 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03182 Cca-Chr3 53251101 53251934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03182 25 225 Homeobox Transcription Factor Family AT3G61890 44.601 2.58e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca03g03182 Homeodomain 6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03182 K09338 - gmx:100806279 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03182 03 53251101 53251934 Cca03g03182 03 53251101 53251934 ECH
Cca11g00541 11 8206852 8208308 Cca03g03182 03 53251101 53251934 ECH
Cca03g03182 03 53251101 53251934 Cca11g00541 11 8206852 8208308 PCT