Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03172 ATGAGGCCGGTTTTCGTTGGCAACTTCGAGTACGACACTCGTCAATCAGAGCTCGAACGCTTGTTCGCCAAGTATGGCAGGATTGATCGCGTCGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGACGAGCGAGATGCTGAAGATGCAATTCGTGCACTGGACAACTTTCCATTTGGATACGAAAAGCGAAGACTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGTCGCCATCGTGGGGATGGCTCTAAGGCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAATTTTGACCCAATTCGTACGCGAGTTCGTGATATAGAAAGACACTTTGAACCTTATGGGAAGGTTCTTAATGTTAGAATTCGTCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGCACACATATGAGTAAGATACTGGACAGAGTGGTGTCTGTTGAGTATGCTCTGAGGGATGATGATGAAAAGGGTGACAGGTATGGTGACAGTCCTAGAAGAGGGGGTTATGGGAGATCCCCCAGTCCAGCTTATCGGAGGCGACCAAGTCCTGACTATGGTCGTCCACGCAGCCCTGCGTATGATAGGTACAATGGACCAGCTTATGACAGGCGCAAGAGCCCTGATTATGGTAGGCCTAGAAGTCCTGATTATGGTAGGCACAGGAGTCCTGAATATGGTAGACATCGCAGCCGTTCACCGATTCGAAGGTCAAGATCTTAG 756 0.4788 MRPVFVGNFEYDTRQSELERLFAKYGRIDRVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYEKRRLSVEWARGERGRHRGDGSKANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDEKGDRYGDSPRRGGYGRSPSPAYRRRPSPDYGRPRSPAYDRYNGPAYDRRKSPDYGRPRSPDYGRHRSPEYGRHRSRSPIRRSRS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03172 251 SMART rrm1_1 93 159 IPR000504 GO:0003723
Cca03g03172 251 SMART rrm1_1 3 70 IPR000504 GO:0003723
Cca03g03172 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 163 IPR000504 GO:0003723
Cca03g03172 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Cca03g03172 251 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 4 206 IPR029537 GO:0000398|GO:0005681
Cca03g03172 251 MobiDBLite consensus disorder prediction 166 251 - -
Cca03g03172 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 156 IPR000504 GO:0003723
Cca03g03172 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Cca03g03172 251 SUPERFAMILY RNA-binding domain, RBD 2 166 IPR035979 GO:0003676
Cca03g03172 251 MobiDBLite consensus disorder prediction 210 242 - -
Cca03g03172 251 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 206 - -
Cca03g03172 251 CDD RRM2_AtRSp31_like 93 162 - -
Cca03g03172 251 Gene3D - 1 83 IPR012677 -
Cca03g03172 251 Gene3D - 84 173 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03172 Cca-Chr3 53144824 53147362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03172 4 169 Eukaryotic Initiation Factors Gene Family AT1G49760 24.194 6.11e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03172 K12893 - gmx:100797709 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03172 03 53144824 53147362 Cca03g03172 03 53144824 53147362 ECH