Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03170 ATGTTCTTTAACTCTTGGGTTGATGACAAGAAGAAAACCATCAACATTATTACTGAGTTATTCACATCTGGAAATTTAAGGCAATACCGTAAAAGGCATAAATATGTTGACATGAAAGCCATAAAAGGTTGGGCTAGGCAAATTCTTCAAGGCTTGGTATACCTTCATAGTCACGATCCACCTATTATTCATAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCATGGAGAAGTTAAGATAGGAGACCTTGGTTTGGCAATTGCAATGCAACAACCAACTGCTCGGAGTGTTATTGGGACTCCTGAATTTATGGCTCCAGAACTATATGAAGAGGAATACAATGAACTTGTTGATGTTTATTCGTTTGGGATGTGCATGTTGGAGATGGTTACTGTTGAGTACCCATATAGTGAATGCAACAATCCAGCCCAAATTTATAAGAAAGTAACTTCTGGTATTGAACCTGCATCCCTTAAAAGAGTAAGCGATCCCCAAATTAAGGAGTTTATTAAGAAATGTCTCGTCCCAGCATCCAAGAGAATGTCTGCAAAGGATCTTCTTAAAGACCCATTTTTGCAAGTTAAGAGTCTAAAACAATCAACCATTGATCCCTTACAATTACCTAATAACTCTTTGAAAGCTATAGATCTTTCCAAGTCTAGTCAGCTATCCATGGACTTAGATGCTGACTATCAACACATATCTTTAAGCACCTGTGTTGATGAAAATAGTCAAGGAAGTCCTCATTGTCCAGTTCATGAAGTTCAAAAGGCTTATGAGAACAATGAGTTTAAGTTGAAAGGGGCCAAAAATGATGATAACTCAATATCATTAATCTTACGTATTGCTGATTTATGTGGTCGAGTAAGAAATATACATTTTCTCTTTTACCTTGAGACGGATACTGCAGTCTCTGTTGCCTCGGAGATGGTAGAAAATTTGGAGCTAGAAAACAATGATGTAGCTTTCATAGTCGAGCTTATTGATTACTTGATTATGAAACTTGTGCCTGATTGGAAACCCTCATTTAATTATTCCTTTAGTGGAGGATCAAGTCAGTGTGGTGGCTCTCCAACACAAGGAGAAAGTCAAGCCTTAATTTCATGCCCCTGGGGTCCTGTCCTTGCTAGTGTTCCATCTGAATTAGTTTTGGATCAAGATAACTCATACGGATTTAATGCTAATCAAGGAGAAGGTTTTACAACAACTACAAAAGGCTACATATCTAATGTTGTTGATAAGGTTGTTCTTGAGGATAAGCATAATTTTTCTAGTTTGTCTAGCTTGGAAGATAGATATTCAGAAGAATCCATAGCTTCTAATATAGCTATTGAAGATACTTGCATGAAAAATAACATTTATCTTGATTATGATGTTGATGGGAGCTTAAAAGAATTAAGTTGGTCCACCTCTGAAGTGGAGCTTGGCGATATGTGCTTTGAAGGCTATAAATTGCATACTATAGATTGCAATGTTGGAGAAAAAATTGAGATAAGTGAATTCTCAAAGAACTCACACTTTATAACTCCATCATTATGTGAAACATCCAATCTTATAAGTCTTACAAGCAATTGTTCTTCCTTATCTTTAGTTGACAAAgaaattgaccttgaactaaagtttgaacttgaTGCAATTGAGTCACAGTATCAACATTGGTTTCAAGAGCTTTCGAGATTAAAGTTGGAAGCAGTGGAAGCCACGAAAAGGAGATGGATAACCAAAAAGAAAATTGGTCATTGA 1752 0.3573 MFFNSWVDDKKKTINIITELFTSGNLRQYRKRHKYVDMKAIKGWARQILQGLVYLHSHDPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIAMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTVEYPYSECNNPAQIYKKVTSGIEPASLKRVSDPQIKEFIKKCLVPASKRMSAKDLLKDPFLQVKSLKQSTIDPLQLPNNSLKAIDLSKSSQLSMDLDADYQHISLSTCVDENSQGSPHCPVHEVQKAYENNEFKLKGAKNDDNSISLILRIADLCGRVRNIHFLFYLETDTAVSVASEMVENLELENNDVAFIVELIDYLIMKLVPDWKPSFNYSFSGGSSQCGGSPTQGESQALISCPWGPVLASVPSELVLDQDNSYGFNANQGEGFTTTTKGYISNVVDKVVLEDKHNFSSLSSLEDRYSEESIASNIAIEDTCMKNNIYLDYDVDGSLKELSWSTSEVELGDMCFEGYKLHTIDCNVGEKIEISEFSKNSHFITPSLCETSNLISLTSNCSSLSLVDKEIDLELKFELDAIESQYQHWFQELSRLKLEAVEATKRRWITKKKIGH 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03170 583 ProSiteProfiles Protein kinase domain profile. 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03170 583 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 581 - -
Cca03g03170 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 62 74 IPR008271 GO:0004672|GO:0006468
Cca03g03170 583 SMART serkin_6 2 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03170 583 Pfam Protein kinase domain 10 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03170 583 Coils Coil 546 566 - -
Cca03g03170 583 SUPERFAMILY Protein kinase-like (PK-like) 8 196 IPR011009 -
Cca03g03170 583 PANTHER KINASE DOMAIN PROTEIN 2 581 - -
Cca03g03170 583 Gene3D - 277 356 - -
Cca03g03170 583 Gene3D Transferase(Phosphotransferase) domain 1 21 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03170 Cca-Chr3 53136178 53140521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03170 523 580 MAP Kinase Kinase Kinase AT5G41990 46.552 4.10e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca03g03170 Pkinase 6.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03170 K08867 - jre:108986606 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03170 03 53136178 53140521 Cca03g03170 03 53136178 53140521 ECH