Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03168 ATGGTTATTCCCACTGGATCATCATTTGTTTATTTGTCCAGTTTTGGGTTGAGAATTGAATCAGCTCAGGTCATGTTTGTCAATGGGTTCAGCTTATCTATTTGGGAGCAGCTTCAGACAAACAAGGAGGTTGGAGCAATGGAAGAGCCAGTGTCAGAGAAGAAAGCAAAACCACAAGAGCAATTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTACTACAACAACTACAGCCTGACACAGCCCAGGTACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTCAGGAATGTCCCCGTTGGAGGTGGCTCTAGGAAGAACAAGAAGGTTATTGTATCATCAAAGGTTCCTGATTTGAATCCACCATCACTTGTTTCTTCCCAAAACCCTAAAATGCAAGGTGTCCATGATCTTAACTTGGCTTTTCCTGCGGCTATGGACAAGTACCATGGCATGTCTATGTCTCCATATGTTGAGGTGCCAAAACTTGAAATTGGTGACAGTACCACTCACCACCATAGttcttcttcttcttctcttTCAGCACTTGAGCTACTACAGTCTGGCATGGCTTCTAGGGGTTTGAGTCCTTATGCTGCAAATTCCATGATGTCAGGCTCAGATTCACTTTACCAACCTGGCTACCCCATGCATGAAATAAAACCAAACCTTACCTTTTCAGTTGATGGGTTTGGAAATAGGTCATATGGGGTTCAAGAGAATGGCAGTGGAAGGCTTTTGTTCCCTTTTGGAGACATCAAGCAGCTTTCTGCAGGTGTTGAAGTGGAACACAATAAAGAACAAGGAAATAATACAACTGGATATTGGACTGGAATCATTGGTGAAGGGTCGTCATGGTGGGACCCTCAAACATTCCTCTGGTCAAGTGGAAATCATTTCATTCATTCATCCAGGTCAATGCCTTCACATGTCGACGATAATTAA 966 0.4265 MVIPTGSSFVYLSSFGLRIESAQVMFVNGFSLSIWEQLQTNKEVGAMEEPVSEKKAKPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVIVSSKVPDLNPPSLVSSQNPKMQGVHDLNLAFPAAMDKYHGMSMSPYVEVPKLEIGDSTTHHHSSSSSSLSALELLQSGMASRGLSPYAANSMMSGSDSLYQPGYPMHEIKPNLTFSVDGFGNRSYGVQENGSGRLLFPFGDIKQLSAGVEVEHNKEQGNNTTGYWTGIIGEGSSWWDPQTFLWSSGNHFIHSSRSMPSHVDDN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03168 321 Pfam Dof domain, zinc finger 60 116 IPR003851 GO:0003677|GO:0006355
Cca03g03168 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 48 287 - -
Cca03g03168 321 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Cca03g03168 321 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Cca03g03168 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 48 287 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03168 Cca-Chr3 53110829 53119264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03168 51 293 C2C2-Dof Transcription Factor Family AT3G61850 49.259 6.44e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca03g03168 zf-Dof 5.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03168 - - gmx:100775598 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03168 03 53110829 53119264 Cca03g03168 03 53110829 53119264 ECH
Cca11g00558 11 8602033 8604248 Cca03g03168 03 53110829 53119264 ECH
Cca03g03168 03 53110829 53119264 Cca11g00558 11 8602033 8604248 PCT