Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03166 ATGAACTATCTGAGACCAGACATAAAGAGAGGAAACATAACCCCTGAAGAAGATGATCTTATAATTAGAATGCATTCACTTTTAGGAAATAGATGGTCCCTCATCGCTGGAAGATTACCAGGACGAACAGATAATGAGATCAAGAACTACTGGAATACCCATCTCAGTAAGAAGCTGAGAAATGAAGGAACCGATCCAAAGACAGGCGACAAGTTAACTgaaaaaaagaagggtaaaaagaagaataagcaaaagaataaggagaataacaacaacaacaacaaAGGGTCAGAGAAAACCTTAGTCTATCTACCAAAACCCATAAGGGTTAAGGCTCTATCATGTATACCCAGAAGTGATAGCACCTTCACCCTCGATTCTAATAGTGCATcaacgagccaagagaaagtgcaaagcccagaagcaaaagagGTAAACATGGTTTGGGAGGTTGGTAACGATGGAGATAATGTGGGGAACATTGTGTTCTTTGGTCAAGACCATGACCTAGTCAACAGCGCCTCTTACGTTGAATCTCATTCTGATCATGTTCACACGGATCATGGTACGTTGGAGAAGCTCTACGAAGAATACTTGCAGCTCTTGAATGTTGAAGACAAACCAGATGAATTAGATTCTTTTGCTCAATCTTTATTGATGTAA 663 0.3409 MNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNEGTDPKTGDKLTEKKKGKKKNKQKNKENNNNNNKGSEKTLVYLPKPIRVKALSCIPRSDSTFTLDSNSASTSQEKVQSPEAKEVNMVWEVGNDGDNVGNIVFFGQDHDLVNSASYVESHSDHVHTDHGTLEKLYEEYLQLLNVEDKPDELDSFAQSLLM 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03166 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 59 IPR017930 -
Cca03g03166 220 MobiDBLite consensus disorder prediction 58 100 - -
Cca03g03166 220 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 206 - -
Cca03g03166 220 MobiDBLite consensus disorder prediction 58 75 - -
Cca03g03166 220 ProSiteProfiles Myb-like domain profile. 5 55 IPR001005 -
Cca03g03166 220 PANTHER MYB TRANSCRIPTION FACTOR 1 206 - -
Cca03g03166 220 Gene3D - 14 100 - -
Cca03g03166 220 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
Cca03g03166 220 CDD SANT 14 55 IPR001005 -
Cca03g03166 220 SUPERFAMILY Homeodomain-like 1 64 IPR009057 -
Cca03g03166 220 SMART sant 9 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03166 Cca-Chr3 53100178 53100840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03166 1 68 MYB Transcription Factor Family AT1G22640 76.471 1.91e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g03166 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03166 K09422 - gmx:778044 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03166 03 53100178 53100840 Cca11g00559 11 8692908 8694242 PCT