Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03164 ATGGGTTTCCATGTTGAGGCACAGGCGAGGATGCACCAACCTTGCGCAGCTTGCAGGATGTTACGCCGTAGATGTGACAATAACTGCCTACTTGCTCCATATTTCCCGACTCAGGAGCTTCACAAATTTGTTGGGGTGCATAAAGTGTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTTGAGGAAAGAAAGAGAGAGGACGCTGTGAAAGCCATGGTTTACGAGGCGACAGCAAGGCTTAGAGACCCAGTTTATGGCAGTGCTGGGTCTATTTACCAGTTGCAAAAGATGATTCAGGAACTGAAAGCACAACTAGAGTCGATGAAAACTCAGGTATCAGAGCTGCGACAACAAAAAGAACTGTTGTTAAGTATTCATAACAACAATGTTCATAGCCACAATGATCCTTTATTCACCGACAATGACCCAATCTTTGATGGTTACTTTGATCAACTCATGGACTCAGATCCATTTGATTTTCCTGTACAAGTTGGCTGGGGATGTAGCAATACAAATAATATGTCAATGCCTTCCTGCTAG 546 0.4359 MGFHVEAQARMHQPCAACRMLRRRCDNNCLLAPYFPTQELHKFVGVHKVFGASNVIKMIQMVEERKREDAVKAMVYEATARLRDPVYGSAGSIYQLQKMIQELKAQLESMKTQVSELRQQKELLLSIHNNNVHSHNDPLFTDNDPIFDGYFDQLMDSDPFDFPVQVGWGCSNTNNMSMPSC 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03164 181 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Cca03g03164 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 6 157 - -
Cca03g03164 181 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Cca03g03164 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 157 - -
Cca03g03164 181 Coils Coil 93 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03164 Cca-Chr3 53077750 53078625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03164 14 130 AS2 family AT2G28500 52.991 5.68e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca03g03164 LOB 4.9e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03164 03 53077750 53078625 Cca03g03164 03 53077750 53078625 ECH