Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03161 ATGGCACTTCCTCAGCCAGAAACAGGTGTGGGAGGTGGCGATCTGTACAGGCAACTGTGGAAGCTATGTGCGGGGCCTCTGGTGGATGTTCCTCGCGAGGGAGAGAGAGTTTTATACTTCCCGCAGGGTCACATGGAACAATTGCAAGCGTCCACTAATCAGGGACTCAACCAGGAACTGAGCCAGCAAATTCCCCATTTCAATCTCCCACCCAAGATTCTCTGCCGCGTTATTCACTGTCAGTTGTTGGCGGAACAAGAAACGGATGAAGTTTATGCTCGTATCACCTTGCTCCCCGATTCTGTTCAAGGTGAGCCGATGGATCGTGACCCAATACCACCCGAGACCCAAAAACAGACGTTTCACTCTTTTAGTAAGATATTAACTGCTTCGGATACTAGCACACATGGGGGATTTTCAGTTCTGCGGAGACATGCTACCGAATGTCTGCCTCAATTGGACATGTCCCAAACTACCCCCACCCAGGAATTGGTAGCAAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAACCGAGGAGGCACTTGCTTACAACTGGGTGGAGTACATTTGTCACATCCAAAAGACTGGTTGCAGGAGATGCTTTTGTGTTTTTAAGGGGAGAGAATGGCGAACTGAGAGTTGGTGTTAGGCGTGTGGCGCAGCCTCAGAGTTCCATGCCTTCGTCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCCTCTCATGCAGTTTTGACAAGAACCATGTTTGTGGTTTATTACAAACCTAGGACTAGCCAGTTTATTATTGGTGTAAACAAATATCTGGATGGAATCAACCGTAATGTTTCAGTTGGCATGCGTTTTAAGATGAGATTTGAGGTGGAGGACTCACCTGAGAGAAGATTTTCTGGTACTATTGTTGGGGTCGGAGATGTATCTCCAGGATGGCCAAACTCTCGGTGGCGTTCATTGAAGGTTCAATGGGATGAACCAGCAACAATTCCAAGGCCAGAGAGGGTTTCTCCATGGGAGATAGAGCCTTTTGTTCCTTCCACAGCTTTGAATGTCGCTCAACAAGTGCCGAAGAGCAAAAGGTCCAGGCCTGCTGAGGCTTCATCTTCTGAAATAGGTCCTAGTTCCCCTGCTCCAGCATTCTGGTATCATGGACCACAACCACATGACCCTACACCATTAGGTGGCACTGCAGAGGTCCAAAGCAATGAAAGCGCAGTTGTAAGGTCTTTGAGGCTGAAAGAAATTAATGGCAATCCCATGAATGGGAAAAACAACAGCTCCAAAGTCCCTGTGGAAGGAATGTGGCCTTCTTCCCCACATTTGAATGTTGTCTCTTCAAACTTTTTGGCCGACGCGAAAGCTGTTGCAGCACAATCACCTATCTCTGGTTATGCTCCTGTGAATGATGATTCGGCACCTGATCCCACAGAATGTGGTAAAAGGAGTGAGAATCCCATGGATTGCTGGTTATTTGGAGTTAATTTGACCAACAATTTTACTAATCCTGCCCTGCCGGATAAAGAACTAGGATGTCCAACAAGTGGTCCCAAAGATTCTGTTCCTGTTGCTCCATGTGAAACTGATGCTCCTCACAATTCCAATAAGGAGCACAAACAAATTATATCTGATGAGAGGCACACCAAACAGGCCAATGTACCCTCCACGAGGACTCGGACCAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCTGTTGACCTTACCGTGTTAAAAGACTATGATGATTTGGTTGATGAGCTTGAGAAAGTGTTTGACATCAAGGGAGAGCTTCGAGTGCAAACCAAATGGGCAATTACTTTCACCGATGATGAAAATGATACCATGCTCGTTGGTGATGATCCCTGGCCGGAGTTTTGCACCATGGTGAAGAAGATTTTTATTTGTGCAAAGGAAGATGTGAAGAAGATGAAAAACAAGCATTGTGCTTCTTCATCAGAGGGTGAAGAGACTCTGTTGAGCCAACATTCACATAATAGGGACGAGACTCAGCAAAACTCTTGCGATTTGACAGCGTAA 2064 0.4656 MALPQPETGVGGGDLYRQLWKLCAGPLVDVPREGERVLYFPQGHMEQLQASTNQGLNQELSQQIPHFNLPPKILCRVIHCQLLAEQETDEVYARITLLPDSVQGEPMDRDPIPPETQKQTFHSFSKILTASDTSTHGGFSVLRRHATECLPQLDMSQTTPTQELVAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRVAQPQSSMPSSVISSQSMHLGVLATASHAVLTRTMFVVYYKPRTSQFIIGVNKYLDGINRNVSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWPNSRWRSLKVQWDEPATIPRPERVSPWEIEPFVPSTALNVAQQVPKSKRSRPAEASSSEIGPSSPAPAFWYHGPQPHDPTPLGGTAEVQSNESAVVRSLRLKEINGNPMNGKNNSSKVPVEGMWPSSPHLNVVSSNFLADAKAVAAQSPISGYAPVNDDSAPDPTECGKRSENPMDCWLFGVNLTNNFTNPALPDKELGCPTSGPKDSVPVAPCETDAPHNSNKEHKQIISDERHTKQANVPSTRTRTKVQMQGVAVGRAVDLTVLKDYDDLVDELEKVFDIKGELRVQTKWAITFTDDENDTMLVGDDPWPEFCTMVKKIFICAKEDVKKMKNKHCASSSEGEETLLSQHSHNRDETQQNSCDLTA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03161 687 Pfam Auxin response factor 250 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca03g03161 687 MobiDBLite consensus disorder prediction 535 564 - -
Cca03g03161 687 Gene3D - 285 356 - -
Cca03g03161 687 Gene3D - 561 653 - -
Cca03g03161 687 CDD B3_DNA 122 224 IPR003340 GO:0003677
Cca03g03161 687 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Cca03g03161 687 MobiDBLite consensus disorder prediction 361 405 - -
Cca03g03161 687 PANTHER AUXIN RESPONSE FACTOR 11 7 658 - -
Cca03g03161 687 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Cca03g03161 687 SMART B3_2 124 226 IPR003340 GO:0003677
Cca03g03161 687 MobiDBLite consensus disorder prediction 361 383 - -
Cca03g03161 687 Pfam AUX/IAA family 610 647 IPR033389 -
Cca03g03161 687 Pfam AUX/IAA family 543 601 IPR033389 -
Cca03g03161 687 ProSiteProfiles PB1 domain profile. 565 646 IPR000270 GO:0005515
Cca03g03161 687 MobiDBLite consensus disorder prediction 661 687 - -
Cca03g03161 687 SUPERFAMILY DNA-binding pseudobarrel domain 114 253 IPR015300 -
Cca03g03161 687 SUPERFAMILY CAD & PB1 domains 561 641 - -
Cca03g03161 687 MobiDBLite consensus disorder prediction 658 687 - -
Cca03g03161 687 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 658 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca03g03161 687 MobiDBLite consensus disorder prediction 539 560 - -
Cca03g03161 687 Gene3D - 121 225 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03161 Cca-Chr3 53045321 53050117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03161 9 655 B3 DNA Binding Superfamily AT2G46530 55.607 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca03g03161 B3 5.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03161 K14486 - gmx:100820503 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03161 03 53045321 53050117 Cca03g03161 03 53045321 53050117 ECH