Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g03160 | ATGGACCATCAACCTCCGCCGTGCCCCCAAGACGACACCACCAGGGCCTCCACGCGCCACCCCGTCTACCGCGGTGTCCGCAAGCGCCGCTGGGGCAAATGGGTCTCCGAAATTCGGGAGCCGCGGAAGAAGTCGCGGATATGGTTGGGGTCGTTTCCGGTGCCGGAGATGGCGGCGCGAGCCTACGACGTGGCGGCCTTCTGCCTCAAGGGCCGGAAGGCGCAGCTCAACTTTCCCGACGAGGTGGAGTCCCTGCCGCTTCCGCCCACGCGCACGCCCAGGGACATCCAggcggcggcggcgaaggcggcgCGCACCATCAAAGCCTCGCGCGACGAGAAGGGCGGCATTGCCTCGGACGACGATTTTTGGGGCCAGATTGAGTTGCCGGAGCTCATGGACGGCGAGCTCGAGTGTTGCTGGATTTCTCCCGGCGGATCATCGTGGACTTCCTCCGGCGACTTCTCCGCGTGGCCGGAGCTGGAGCTTTTGCCGCCGTTCATGGCGTGTTTATAA | 516 | 0.6221 | MDHQPPPCPQDDTTRASTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAARAYDVAAFCLKGRKAQLNFPDEVESLPLPPTRTPRDIQAAAAKAARTIKASRDEKGGIASDDDFWGQIELPELMDGELECCWISPGGSSWTSSGDFSAWPELELLPPFMACL | 171 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g03160 | 171 | Pfam | AP2 domain | 21 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03160 | 171 | Gene3D | AP2/ERF domain | 22 | 80 | IPR036955 | GO:0003700|GO:0006355 | |
Cca03g03160 | 171 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cca03g03160 | 171 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 10 | 158 | - | - | |
Cca03g03160 | 171 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 | 10 | 158 | - | - | |
Cca03g03160 | 171 | SUPERFAMILY | DNA-binding domain | 22 | 81 | IPR016177 | GO:0003677 | |
Cca03g03160 | 171 | CDD | AP2 | 23 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03160 | 171 | SMART | rav1_2 | 22 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03160 | 171 | PRINTS | Ethylene responsive element binding protein signature | 23 | 34 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03160 | 171 | PRINTS | Ethylene responsive element binding protein signature | 61 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03160 | 171 | ProSiteProfiles | AP2/ERF domain profile. | 22 | 79 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g03160 | Cca-Chr3 | 53020571 | 53021209 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g03160 | 12 | 171 | AP2-EREBP Transcription Factor Family | AT1G01250 | 61.446 | 3.49e-59 | 181 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Cca03g03160 | AP2 | 5.7e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g03160 | K09286 | - | gmx:100819971 | 268.855 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g03160 | 03 | 53020571 | 53021209 | Cca03g03160 | 03 | 53020571 | 53021209 | ECH |