Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03160 ATGGACCATCAACCTCCGCCGTGCCCCCAAGACGACACCACCAGGGCCTCCACGCGCCACCCCGTCTACCGCGGTGTCCGCAAGCGCCGCTGGGGCAAATGGGTCTCCGAAATTCGGGAGCCGCGGAAGAAGTCGCGGATATGGTTGGGGTCGTTTCCGGTGCCGGAGATGGCGGCGCGAGCCTACGACGTGGCGGCCTTCTGCCTCAAGGGCCGGAAGGCGCAGCTCAACTTTCCCGACGAGGTGGAGTCCCTGCCGCTTCCGCCCACGCGCACGCCCAGGGACATCCAggcggcggcggcgaaggcggcgCGCACCATCAAAGCCTCGCGCGACGAGAAGGGCGGCATTGCCTCGGACGACGATTTTTGGGGCCAGATTGAGTTGCCGGAGCTCATGGACGGCGAGCTCGAGTGTTGCTGGATTTCTCCCGGCGGATCATCGTGGACTTCCTCCGGCGACTTCTCCGCGTGGCCGGAGCTGGAGCTTTTGCCGCCGTTCATGGCGTGTTTATAA 516 0.6221 MDHQPPPCPQDDTTRASTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAARAYDVAAFCLKGRKAQLNFPDEVESLPLPPTRTPRDIQAAAAKAARTIKASRDEKGGIASDDDFWGQIELPELMDGELECCWISPGGSSWTSSGDFSAWPELELLPPFMACL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03160 171 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Cca03g03160 171 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Cca03g03160 171 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g03160 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 158 - -
Cca03g03160 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 10 158 - -
Cca03g03160 171 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Cca03g03160 171 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Cca03g03160 171 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Cca03g03160 171 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Cca03g03160 171 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Cca03g03160 171 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03160 Cca-Chr3 53020571 53021209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03160 12 171 AP2-EREBP Transcription Factor Family AT1G01250 61.446 3.49e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g03160 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03160 K09286 - gmx:100819971 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03160 03 53020571 53021209 Cca03g03160 03 53020571 53021209 ECH