Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03159 ATGAAGAGCGTGGAGTGGGACGATGAAGAGAAGGCGATGGTGGGAGCGGTTCTTGGAGGTGGAGCGTTGGAGTTTTTGATGAGAAATTCAGTATGGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGAAGAGGGAGTTCAGAACAATCTATCCGATCTGGTGGAGCGTCCCAACCACTCGAATTTCAGTTGGAATTACGCCATTTTCTGGCAACTCTCTCAGTCCAAATCCGGTGATTGGGTTCTGTGTTGGGGCGACGGATGCTGCAGAGAACCGAACGAAGAAGAAGTGGTTGCTGTGAGAGGAAGAGGGAGGGTTGTGGAGGAAGAGATGCATCAGAGGATGAGAAAGAGAGTGCTGCAGAAGCTTCACACCACTTTCGGTGGTTCCGATGAAGACAATTATGCAGTTGGCCTCGACCACGTCACTGACACCGAGATGTTCTTTCTGGCCTCCATGTACTTCTCCTTCCCTCGCGGCCACGGTGGCCCTGGTAAGTGCTTCGCCTCCGGCAACCATTTATGGCTCAAATCTGTTTCCGATTACTGCGTCCGTTCTTTCTTGGCTAAATCCGCCGGAATACAGACTGTTGTTTTGGTCCCCACCGATTTGGGAGTTGTAGAGTTGGGTTCTGTTAGAATCTTACCAGAGAGTTTTCAACTCTTGCACACCGTTAAGTCTCTCTTTTCCACGCATTCTTCTAATGCCCTTTTCACCGGTTTGGCCATTGGGGATGGCAAGGTAGACGCAGGAGTTCCAATTCCCAAGGTTTTTAGAGAGAAACTTGCTGTTAGGAAAATGGAGGACAATGATAGGGCTTGGGGAGGTCACCCCAGGAACGGTCTTCAAGTTGAGAATTTTGCTCCTAGGACATCCACTAGCAGTGTCGCCAATGCTGTGAGACACGATTTCAGGCTTAGCAATACCTATCTACCTCAAAGGCAGGTGCAAATGCAAATTGATTTCACTGGAGCTACTTCAAGGCCTTCTTCGGTGAGGCCGGTTATTGCGGAATCAGAACTTTCTGATGTCGAGGCTTCCGGCAAGGAGGAGCAACCCACTGTTGCTGATGAAAGGAAGCCCAGAAAGCGAGGCAGGAAGCCGGCTAATGGAAGGGAAGAACCTCTCAATCATGTTGAAGCAGAGAGGCAGAGGCGTGAGAAGCTCAACCAGCGCTTCTATGCATTAAGATCTGTTGTGCCTAATATCTCCAAGATGGATAAGGCGTCCTTGTTGGGTGATGCCATTGCTTATATCAATGAGCTTCAGGCTAAAGTTAGGATCATGGAGGCTGAAAGAGAGAGATTTGGAAACACTTCAAAGGATGGCTCAGTTTTGGAGGGCAACTCAAGTTTGGACAACCAGGAAAAGGAAGCTCCTCATGTGGATGTTCAAGCTGTTCAAGATGAGGTCATTGTAAAGGTTTATCAGCAATTAATTGCTGCCACGGGCAATTTGGAATGGCCAAATTATTAA 1476 0.4851 MKSVEWDDEEKAMVGAVLGGGALEFLMRNSVWNESVLMAVGSEEGVQNNLSDLVERPNHSNFSWNYAIFWQLSQSKSGDWVLCWGDGCCREPNEEEVVAVRGRGRVVEEEMHQRMRKRVLQKLHTTFGGSDEDNYAVGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFASGNHLWLKSVSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSVRILPESFQLLHTVKSLFSTHSSNALFTGLAIGDGKVDAGVPIPKVFREKLAVRKMEDNDRAWGGHPRNGLQVENFAPRTSTSSVANAVRHDFRLSNTYLPQRQVQMQIDFTGATSRPSSVRPVIAESELSDVEASGKEEQPTVADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVRIMEAERERFGNTSKDGSVLEGNSSLDNQEKEAPHVDVQAVQDEVIVKVYQQLIAATGNLEWPNY 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03159 491 Coils Coil 419 439 - -
Cca03g03159 491 Gene3D - 366 438 IPR036638 GO:0046983
Cca03g03159 491 MobiDBLite consensus disorder prediction 338 384 - -
Cca03g03159 491 MobiDBLite consensus disorder prediction 343 384 - -
Cca03g03159 491 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 293 476 - -
Cca03g03159 491 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 6 241 - -
Cca03g03159 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 376 436 IPR036638 GO:0046983
Cca03g03159 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 422 IPR011598 GO:0046983
Cca03g03159 491 Pfam Helix-loop-helix DNA-binding domain 377 423 IPR011598 GO:0046983
Cca03g03159 491 MobiDBLite consensus disorder prediction 439 459 - -
Cca03g03159 491 PANTHER MYC 293 476 IPR045084 GO:0003700|GO:0006355
Cca03g03159 491 PANTHER MYC 6 241 IPR045084 GO:0003700|GO:0006355
Cca03g03159 491 CDD bHLH_AtAIB_like 370 442 - -
Cca03g03159 491 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 47 229 IPR025610 -
Cca03g03159 491 SMART finulus 379 428 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03159 Cca-Chr3 53008862 53013075 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03159 6 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.187 6.16e-162 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g03159 bHLH-MYC_N 1.7e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03159 - - gmx:100801502 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03159 03 53008862 53013075 Cca03g03159 03 53008862 53013075 ECH
Cca03g03159 03 53008862 53013075 Cca11g00572 11 9029800 9031877 PCT