Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03157 ATGAAGGGCGTGGAGTGGGACGATGAAGAGAAGGCGATGGTAGGAGCGGTTCTTGGAGGTGGAGCGTTAGAGTTTTTAATGAGAAATTCAGTGTGGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGAAGAGGGAGTTCAGAACAATCTATCCGATCTGGTGGAGCGTCCCAACCAATCGAATTTCAGTTGGAATTACGCCATTTTCTGGCAACTCTCTCAGTCCAAATCCGGTGACTGGGTTCTGTGTTGGGGCGACGGATGCTGCAGAGAACCGAACGAAGAAGAAGAGGTTGCTGTGAGAGGAAGAGGAAGGCTTGTGGAGGAAGAGATGCATCAGAGGATGAGAAAGAGAGTGCTGCAGAAGCTTCACACCACTTTCGGTGGTTCCGATGAAGACAATTATGCAGTTGGCCTCGACCACGTCACTGACACCGAGATGTTCTTTCTGGCCTCCATGTACTTCTCCTTCCCTCGCGGCCACGGTGGCCCTGGTAAGTGCTTCGCCTCCGGCAACCATTTATGGCTCAAATCTGTTTCCGATTACTGCGTCCGTTCTTTCTTGGCTAAATCCGCCGGAATACAGACTGTTGTTTTGGTCCCCACCGATTTGGGAGTTGTAGAGTTGGGTTCTGTTAGAATCTTACCAGAGAGTTTTCAACTCTTGCACACCGTTAAGTCTCTCTTTTCCACGCATTCTTCTAATGCCCTGATGAGAAATTCAGTATGGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGAAGAGGGAGTTCAGAACAATCTATCCGATCTGGTGGAGCGTCCCAACCACTCGAATTTCAGTTGGAATTACGCCATTTTCTGGCAACTCTCTCAGTCCAAATCCGGTGACTGGGTTCTGTGTTGGGGCGACGGATGCTGCAGAGAACCGAACGAAGAAGAAGAGGTTGCTGTGAGAGGAAGAGGAAGGCTTGTGGAGGAAGAGATGCATCAGAGGATGAGAAAGAGAGTGCTGCAGAAGCTTCACACCACTTTCGGTGGTTCCGATGAAGACAATTATGCAGTTGGCCTCGACCACGTCACTGACACCGAGATGTTCTTTCTGGCCTCCATGTACTTCTCCTTCCCTCGCGGCCACGGTGGCCCTGGTAAGTGCCTCGCCTCCGGCAACCATTTATGGCTCAAATCTGTTTCCGATTACTGCGTCCGTTCTTTCTTGGCTAAATCCGCCGGAATACAGACTGTTGTTTTGGTCCCCACCGATTTGGGAGTTGTAGAGTTGGGTTCTGTTAGAATCTTACCAGAGAGTTTTCAACTCTTGCACACCGTTAAGTCTCTCTTTTCCACGCATTCTTCTAATGCCCTTTTCACCGGTTTGGCCATTGGGGATGGCAAGGTAGACGCAGGAGTTCCAATTCCCAAGGTTTTTAGAGAGAAACTTGCTGTTAGGAAAATGGACGATAATAATAGGACTTGGGGAGGTCACCCCAGGAACGGTCTTCAGGCTGAGATTTTTGCTCCTAGGGCATCCACTAGCAGTGTCGCTAATGCTGTGAGACACGATTTCAGGCTTGGCAATACCTATCAACCTCAAAGGCAGCTGCAAATGCAAATTGATTTCACTGGAGCCACTTCAAGGCCTTCTTCGGTGAAACCAGTTATTGGTGAATCAGAATTATCTGATGTTGAGGCTTCCTGCAAGGAGGAGCAACCCATTCTTGCTGATGAAAGGAAGCCCAGAAAGCGAGGCAGGAAGCCAGCTAATGGAAGGGACGAGCCACTCAATCACGTTGAAGCAGAGAGGCAGAGGCGTGAGAAGCTCAACCAGCGCTTCTATGCGCTAAGATCTGTTGTGCCTAATATCTCCAAGATGGATAAGGCGTCCTTGTTGGGTGATGCCATTGCTTATATCAATGAGCTTCAGGCCAAAGTCAGGATCATGGAGGCTGAAAGAGAGAGATTTGGAAGCACTTCAAAGGATGAATCAGTTTTGGAGGGCAACTCAAGTTTGGACATTCAGGATAAGGAAGCTTCTCGGGTGAATGTTCAAGCTGTTCGAGATGAGGTCATTGTAAAGGTTCTTTCTTTTCTTCTCTCTTGA 2079 0.4882 MKGVEWDDEEKAMVGAVLGGGALEFLMRNSVWNESVLMAVGSEEGVQNNLSDLVERPNQSNFSWNYAIFWQLSQSKSGDWVLCWGDGCCREPNEEEEVAVRGRGRLVEEEMHQRMRKRVLQKLHTTFGGSDEDNYAVGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFASGNHLWLKSVSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSVRILPESFQLLHTVKSLFSTHSSNALMRNSVWNESVLMAVGSEEGVQNNLSDLVERPNHSNFSWNYAIFWQLSQSKSGDWVLCWGDGCCREPNEEEEVAVRGRGRLVEEEMHQRMRKRVLQKLHTTFGGSDEDNYAVGLDHVTDTEMFFLASMYFSFPRGHGGPGKCLASGNHLWLKSVSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSVRILPESFQLLHTVKSLFSTHSSNALFTGLAIGDGKVDAGVPIPKVFREKLAVRKMDDNNRTWGGHPRNGLQAEIFAPRASTSSVANAVRHDFRLGNTYQPQRQLQMQIDFTGATSRPSSVKPVIGESELSDVEASCKEEQPILADERKPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVRIMEAERERFGSTSKDESVLEGNSSLDIQDKEASRVNVQAVRDEVIVKVLSFLLS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03157 692 PANTHER MYC 503 686 IPR045084 GO:0003700|GO:0006355
Cca03g03157 692 SMART finulus 590 639 IPR011598 GO:0046983
Cca03g03157 692 Gene3D - 578 649 IPR036638 GO:0046983
Cca03g03157 692 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 584 633 IPR011598 GO:0046983
Cca03g03157 692 Pfam Helix-loop-helix DNA-binding domain 588 634 IPR011598 GO:0046983
Cca03g03157 692 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 47 229 IPR025610 -
Cca03g03157 692 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 258 440 IPR025610 -
Cca03g03157 692 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 237 452 - -
Cca03g03157 692 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 503 686 - -
Cca03g03157 692 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 5 235 - -
Cca03g03157 692 Coils Coil 630 650 - -
Cca03g03157 692 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 583 647 IPR036638 GO:0046983
Cca03g03157 692 PANTHER MYC 237 452 IPR045084 GO:0003700|GO:0006355
Cca03g03157 692 PANTHER MYC 5 235 IPR045084 GO:0003700|GO:0006355
Cca03g03157 692 MobiDBLite consensus disorder prediction 536 592 - -
Cca03g03157 692 MobiDBLite consensus disorder prediction 554 592 - -
Cca03g03157 692 CDD bHLH_AtAIB_like 581 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03157 Cca-Chr3 52989741 52992333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03157 225 686 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.000 8.88e-150 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g03157 bHLH-MYC_N 3.4e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03157 - - gmx:100801502 647.891