Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03156 ATGGAAGCGGAGAGTCGTCGGAAAGTTGAGGACATGGTGTTGGACATACTGAAGAAATCGAACATAGAAGAAGCCACTGAATTCAGCATCCGAGTCGCTGCTTCCGAGCGCCTTGGCATCGACCTCTCCCACTCCACCGGTAAACAACTCGTCAGAAACATCGTTGAGTCTTATCTTGTCTCCGTTGTGGCCAACGAAAAATCCAAAAACACAGAGAAGAAGGAAGATATCCCCGCCAACGACGACGTACAGAAGAAGCACGATGTTGTTGTTCCCGCCAAAGAAGGCACACAGGTGGCCAGAGTGACGAGGAAAGATTCCGAGCGCGTTATTTGCCAGCTGTCTAACAGGAGGAATGTGGCGGTGAAAGCTTTCAAAGGGACAACACTGGTTTCAATTAGGGAGTTCTATGTCAAAGACGGAAAACTACTTCCTGGTTCTAAAGGGATAAGTTTATCTTCTGAACAATGGTCAACCTTCAAGAAGAGTGTTCCTGCCATAGAGGAAGCTATCACAAAGATGGAAGGGAGGATACGATTGGAGCATAATGGTAAGCAAAATGGAGATGCGTCAAATGCAGTTGTTGATGCTGCTCCTGTTGAGCCTGTCCCTACTGAGGTTGTTCATTTTGAGGTCCCTATTGAGGTCATCCGTTTTGATGGGAAGAATTACCAATTCTGGGCCCAGCAGATGGAATTACTCTTGAAACAATTAAAGATTGAATATGTGCTTACTGAACCATGCCCAAACCTCACTGTAGAGGAAGGTGCAAGTGCTGAAAAAATTGCTGCAGCCAAGGCGGCAGAAAGGAGATGGCTCAATGATGATTTAATGTGTCATCGCAATATCTTGAACCATTTATCTGATCATCTGTTCAATCTGCATGCGAACAGAAAAATGAGTGCTAAAGAGTTGTGGGAAGAGTTAAAACTGGTTTATCTGTACGAGGAATTTGGAACCAAGAGATCTCAAGTGAAAAAGTATATTGAATTTCAGATGGTTGATGAGAAAGCAGTTATGGAGCAAATCCGAGAATTAAATGGCATTGCAGATTCTATTGTTGCTGCTGGAATGTTTCTTGATGATAACTTCCATGTTAGTCTCATCATTTCAAAACTTCCACCATCATGGAAGGACTTCAGCATCAAGTTAATGCGTGAGGAGTATCTACCATTCTGGAAGTTAATGGAACGTATACAGATAGAGGAAGAATCTCGCAGTGGAGTAAAACAAGTGGGTGAACATTACGACAGTGTAGGATTTCACCTGGCCAATAGAGGTGGACAGAGGAGGGTGGACAATAGGCCACTGAGAATGCCTAGGAACAGGGCATACACAATCGTTACTTCTTTTTTGGCAGGAGGCAAGGATGGCCATTTTTGGATAATGCATGGGCAACCATTAGTTCTTTCAGAAGTAGTTAATTGCATCCACGGTTGTGCAATGCTGATCCAAACATGCGGTGAATCACGCCTCATTGTAGCAATTTGA 1491 0.4393 MEAESRRKVEDMVLDILKKSNIEEATEFSIRVAASERLGIDLSHSTGKQLVRNIVESYLVSVVANEKSKNTEKKEDIPANDDVQKKHDVVVPAKEGTQVARVTRKDSERVICQLSNRRNVAVKAFKGTTLVSIREFYVKDGKLLPGSKGISLSSEQWSTFKKSVPAIEEAITKMEGRIRLEHNGKQNGDASNAVVDAAPVEPVPTEVVHFEVPIEVIRFDGKNYQFWAQQMELLLKQLKIEYVLTEPCPNLTVEEGASAEKIAAAKAAERRWLNDDLMCHRNILNHLSDHLFNLHANRKMSAKELWEELKLVYLYEEFGTKRSQVKKYIEFQMVDEKAVMEQIRELNGIADSIVAAGMFLDDNFHVSLIISKLPPSWKDFSIKLMREEYLPFWKLMERIQIEEESRSGVKQVGEHYDSVGFHLANRGGQRRVDNRPLRMPRNRAYTIVTSFLAGGKDGHFWIMHGQPLVLSEVVNCIHGCAMLIQTCGESRLIVAI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03156 496 Pfam Transcriptional Coactivator p15 (PC4) 112 162 IPR003173 GO:0003677|GO:0006355
Cca03g03156 496 Pfam gag-polypeptide of LTR copia-type 272 407 - -
Cca03g03156 496 PANTHER PBF68 PROTEIN 1 437 - -
Cca03g03156 496 SUPERFAMILY ssDNA-binding transcriptional regulator domain 111 173 IPR009044 GO:0003677|GO:0006355
Cca03g03156 496 Gene3D Transcriptional Coactivator Pc4; Chain A 103 179 IPR009044 GO:0003677|GO:0006355
Cca03g03156 496 Pfam DEK C terminal domain 5 59 IPR014876 -
Cca03g03156 496 PANTHER PBF68 PROTEIN 1 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03156 Cca-Chr3 52976549 52980325 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Cca03g03156 Retrotran_gag_2 6.7e-14 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03156 - - gmx:100800963 603.208