Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03153 ATGAGTGAGAGAATGGAATCGAGTAGCATTGAGAGCAACACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCTTCAGTTTTCTTCAATCTCGAAGCTGCATAACAACGGTCCCACCACTACGAGTGTCCACGACCTTCTCGAATGCCCCGTCTGCACCAACTCTATGTACCCTCCAATTCATCAGTGCCACAATGGGCACACACTCTGTTCAACTTGCAAGACAAGGGTACACAACCGATGTCCAACTTGCAGGCAGGAGCTCGGTGATATAAGATGTCTGGCATTGGAGAAGATAGCAGAATCACTTGAATTGCCATGCAGATACATCTCTCTCGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAGCATGAGGCTATTTGTAACTTCAGACCTTACAACTGCCCTTATGCCGGGTCAGACTGCTCAGTGGTTGGGGATATTCCATGCCTAGTCGCTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCCCTGGAAGTGGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTAGGCATGGCTCCCGTTTACATGGCGTTCCTCCGATTCATGGGTGACGAAAGAGAGGCGCGGAACTACAGCTACAGCTTGGAGGTTGGAGGAAATGGACGCAAACTAACATTCGAGGGCAGTCCGCGAAGCATTAGAGATAGCCATAAGAAAGTCAGAGACAGTCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCAGGTGGAGATAGGAAAGAGTTGAAGCTAAGAGTAACAGGGAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTTTGTAGCTAG 945 0.4741 MSERMESSSIESNTVSSMTMMEEDEHPLQFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPLEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03153 314 SUPERFAMILY TRAF domain-like 105 297 - -
Cca03g03153 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 160 IPR013083 -
Cca03g03153 314 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 175 293 IPR008974 GO:0005515
Cca03g03153 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 104 IPR013083 -
Cca03g03153 314 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g03153 314 Pfam Seven in absentia protein family 94 293 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cca03g03153 314 SUPERFAMILY RING/U-box 39 91 - -
Cca03g03153 314 PANTHER UBIQUITIN LIGASE SINAT3 3 306 - -
Cca03g03153 314 CDD RING-HC_SIAHs 50 88 - -
Cca03g03153 314 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g03153 314 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 3 306 - -
Cca03g03153 314 ProSiteProfiles Zinc finger SIAH-type profile. 105 165 IPR013010 GO:0008270
Cca03g03153 314 ProSiteProfiles Zinc finger RING-type profile. 52 88 IPR001841 -
Cca03g03153 314 CDD Sina 166 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03153 Cca-Chr3 52938609 52945457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03153 1 300 C3H Transcription Factor Family AT2G41980 71.192 3.49e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03153 K04506 - gmx:100792687 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03153 03 52938609 52945457 Cca03g03153 03 52938609 52945457 ECH