Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g03153 | ATGAGTGAGAGAATGGAATCGAGTAGCATTGAGAGCAACACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCTTCAGTTTTCTTCAATCTCGAAGCTGCATAACAACGGTCCCACCACTACGAGTGTCCACGACCTTCTCGAATGCCCCGTCTGCACCAACTCTATGTACCCTCCAATTCATCAGTGCCACAATGGGCACACACTCTGTTCAACTTGCAAGACAAGGGTACACAACCGATGTCCAACTTGCAGGCAGGAGCTCGGTGATATAAGATGTCTGGCATTGGAGAAGATAGCAGAATCACTTGAATTGCCATGCAGATACATCTCTCTCGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAGCATGAGGCTATTTGTAACTTCAGACCTTACAACTGCCCTTATGCCGGGTCAGACTGCTCAGTGGTTGGGGATATTCCATGCCTAGTCGCTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCCCTGGAAGTGGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTAGGCATGGCTCCCGTTTACATGGCGTTCCTCCGATTCATGGGTGACGAAAGAGAGGCGCGGAACTACAGCTACAGCTTGGAGGTTGGAGGAAATGGACGCAAACTAACATTCGAGGGCAGTCCGCGAAGCATTAGAGATAGCCATAAGAAAGTCAGAGACAGTCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCAGGTGGAGATAGGAAAGAGTTGAAGCTAAGAGTAACAGGGAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTTTGTAGCTAG | 945 | 0.4741 | MSERMESSSIESNTVSSMTMMEEDEHPLQFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPLEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g03153 | 314 | SUPERFAMILY | TRAF domain-like | 105 | 297 | - | - | |
Cca03g03153 | 314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 160 | IPR013083 | - | |
Cca03g03153 | 314 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 175 | 293 | IPR008974 | GO:0005515 | |
Cca03g03153 | 314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 104 | IPR013083 | - | |
Cca03g03153 | 314 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cca03g03153 | 314 | Pfam | Seven in absentia protein family | 94 | 293 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cca03g03153 | 314 | SUPERFAMILY | RING/U-box | 39 | 91 | - | - | |
Cca03g03153 | 314 | PANTHER | UBIQUITIN LIGASE SINAT3 | 3 | 306 | - | - | |
Cca03g03153 | 314 | CDD | RING-HC_SIAHs | 50 | 88 | - | - | |
Cca03g03153 | 314 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cca03g03153 | 314 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 3 | 306 | - | - | |
Cca03g03153 | 314 | ProSiteProfiles | Zinc finger SIAH-type profile. | 105 | 165 | IPR013010 | GO:0008270 | |
Cca03g03153 | 314 | ProSiteProfiles | Zinc finger RING-type profile. | 52 | 88 | IPR001841 | - | |
Cca03g03153 | 314 | CDD | Sina | 166 | 294 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g03153 | Cca-Chr3 | 52938609 | 52945457 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g03153 | 1 | 300 | C3H Transcription Factor Family | AT2G41980 | 71.192 | 3.49e-162 | 452 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g03153 | K04506 | - | gmx:100792687 | 657.907 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g03153 | 03 | 52938609 | 52945457 | Cca03g03153 | 03 | 52938609 | 52945457 | ECH |