Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03149 ATGAGATTTAAGGATCGGTTTGATATTGCGAATCATAAGAGGCCATGTGCGGATTTGAGAGCAGAAACAGTCGTCAAGTTCATTGTTTCTTCGATTATCGAACGGGTGGTTCACAGCACGGTCTTGGAGATTTTGGAATCATCACATTATCCATTGTTGGATCAGCTATCATTTGTGCCATTGGGATGGCATGCTACGTGTCCTTCAAGTACAAAAGAGGCAATACAGCCAACATTGGTGTTGCACAGAGGTCAACAACAACTGCAATATCACCCACCCCAACCTGCCATTATTGATAGGATGGGGTTAGATGAATCTACAATGGAGTCTTATGAGACGTTGGTACTAGGTGAGAGCCGACGAGTACCTTGTCTCAGTGACGGATGTTGCACCATATGCCTGTCAGATTATAAAACCAAAGAGACAATCAGATGCGTTCCTGAATGTGCACATTGCTTCCATGCTGATCGCATAGATGAATGGCTTCGTATGAACAGAACATGCCCCCTTTGTCGCAACTCTCCCTCCTCTCCTCCTTCTACTACTCTAGTTATGTCCAGTGGGTTTTCTAGAGAAGCTCATCCGCGCATCATGACCGAGGCTTTCTCCGAGGTCTTCGCACGAGGAGTGGCTAGCATGGGGGTTGGCAGCTGTGGCGCTAGTCGACGACTACGACAGGGTTCGTCACCACCATTGAACTGCACTCCTCCGCGTAATTCCAAGGTTGTTAAGGCGTGGCTGTCTGAGGTGTGGTTGTCCAAAGCGTGTTGTTAA 774 0.4767 MRFKDRFDIANHKRPCADLRAETVVKFIVSSIIERVVHSTVLEILESSHYPLLDQLSFVPLGWHATCPSSTKEAIQPTLVLHRGQQQLQYHPPQPAIIDRMGLDESTMESYETLVLGESRRVPCLSDGCCTICLSDYKTKETIRCVPECAHCFHADRIDEWLRMNRTCPLCRNSPSSPPSTTLVMSSGFSREAHPRIMTEAFSEVFARGVASMGVGSCGASRRLRQGSSPPLNCTPPRNSKVVKAWLSEVWLSKACC 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03149 257 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Cca03g03149 257 SUPERFAMILY RING/U-box 123 178 - -
Cca03g03149 257 Pfam Ring finger domain 130 172 IPR001841 -
Cca03g03149 257 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 94 177 - -
Cca03g03149 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 177 IPR013083 -
Cca03g03149 257 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 94 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03149 Cca-Chr3 52913309 52917038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03149 93 176 C3H Transcription Factor Family AT5G07040 57.143 2.57e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03149 - - ccaj:109796544 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03149 03 52913309 52917038 Cca03g03149 03 52913309 52917038 ECH
Cca03g03149 03 52913309 52917038 Cca11g00585 11 9261199 9263916 PCT