Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03148 ATGGAGCAGAACCGGAGCAAGAAGATGTACAACCTGTTCGTGAAGCATTTGGACGGGAAAACCCTAACCCTCCTATTCCCCTCTCCGATTCTCTACGCGAATTCCATCAAGGATCGCCTCTTCGAACTCACCGGAATCCCCGCGCAGCACCAGCGCCTCGTCACGGGTTTCCGCCATCTGAACGATGAAAAATCGGCGATCCAATGCTCCCCGGAGGACGGCAACATGTTCCCCTCGGTGCGCTTGCTGCTGCGCCTCAAGGGCGGGAAGGGCGGCTTCGGCTCGCTGCTGCGTGGCGCAGCGACGAAGGCGGGGCAGAAGAAGACGAACAATTTCGACGCGTGCAGGGACATGAGTGGCCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTGGAGGAGTGGAAGGCCGGGGAAGAGGAGAGAAAGCTCGAGAAGGTGGCGGAGGAGTTTCTGAAGAAGCAGATGAAGAAGGGTAAGGGTAAGGGTGATGGCGAGGCCCATAAATACGTCGCCAAATACAGGGAGGAATCTGAACGTTGCGTTGCTGAGGTTGCCTTGTCCGTTAAGGAGGTACTCACTGCCAAGCGCAAGGGCCCTTCACAACCCCACAATGATGCCAAGAGGTTGAAGATATGGATGGGGAAGAGGAAACTGAATGAAAGTGACAGTGATGTGTCTGATGAAGAGGGGGAGACTGAGAAATCGGATTTGTTGGATGGCCAGAATGAGTCCGGTGCAAATAAGGGTGACGGTAGTTTGGATTCGGTAACTGGGGGTGGAGTCTCGTGTGAAAGTGGGTCTGAAGAAGAGAAGGAATATGCTGTACAAGGAAAAGTGAGTGGCGAAAGTACCCAGGCAGGACTGAGTGTTGTGGCTGAACCTGTTGTAAGCGACAAGGCTACTGCAATGCCAAAGGAGTCAGTGGTTGCTGGACTTAATGCTGAAGAAAATAGATATCAGGATTGCCGTGGAGGTGTGTCTGACAAGTTTGATGGTGCTCTGAATCAAACCTCCAATGCCTCGAATACTGTGGGCTCTGAAAACGTGGCCAGTGCTGGTGAATCTAATGATATGGAAATTGATGGATCTCTTGAGCATAAAGTAGCAGTCAATGAAGAAAGCTCGCCAAGCACTAGTGTTCCCACATTGGAGGAGCCCCTGAATTTTGATGCTTTTAATGCAGCTGCCGAACTTGAGGTTCTTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGTTAGGCTTTTTCTTTTAAAATCGACTCCTCTGGATAAGCTTCCAAAGAAGCTGCTTGCAAAGAAGTGA 1347 0.5167 MEQNRSKKMYNLFVKHLDGKTLTLLFPSPILYANSIKDRLFELTGIPAQHQRLVTGFRHLNDEKSAIQCSPEDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERKLEKVAEEFLKKQMKKGKGKGDGEAHKYVAKYREESERCVAEVALSVKEVLTAKRKGPSQPHNDAKRLKIWMGKRKLNESDSDVSDEEGETEKSDLLDGQNESGANKGDGSLDSVTGGGVSCESGSEEEKEYAVQGKVSGESTQAGLSVVAEPVVSDKATAMPKESVVAGLNAEENRYQDCRGGVSDKFDGALNQTSNASNTVGSENVASAGESNDMEIDGSLEHKVAVNEESSPSTSVPTLEEPLNFDAFNAAAELEVLGLERLKSELQSRGLKCGGTLQERAVRLFLLKSTPLDKLPKKLLAKK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03148 448 MobiDBLite consensus disorder prediction 196 289 - -
Cca03g03148 448 MobiDBLite consensus disorder prediction 331 358 - -
Cca03g03148 448 PANTHER SPLICING FACTOR SF3A-RELATED 9 447 - -
Cca03g03148 448 SUPERFAMILY Ubiquitin-like 7 89 IPR029071 -
Cca03g03148 448 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 155 IPR024974 -
Cca03g03148 448 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 447 - -
Cca03g03148 448 MobiDBLite consensus disorder prediction 201 224 - -
Cca03g03148 448 Gene3D - 2 91 - -
Cca03g03148 448 Pfam Replication stress response SDE2 C-terminal 375 447 - -
Cca03g03148 448 ProSiteProfiles Ubiquitin domain profile. 10 75 IPR000626 GO:0005515
Cca03g03148 448 Coils Coil 394 414 - -
Cca03g03148 448 MobiDBLite consensus disorder prediction 332 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03148 Cca-Chr3 52909303 52911153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03148 381 447 C2H2 Transcription Factor Family AT5G06160 46.269 3.12e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03148 K25059 - gmx:100781694 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03148 03 52909303 52911153 Cca03g03148 03 52909303 52911153 ECH