Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03147 atgaaaaaatacttgacttcacttttcatcattgatattctatcaattattccacttccacagGTGATTGTTTTAGCCACAAATCCAAGCCTGGGAACAACAGATCCATTTGTAGCAAAGGAGTTGTTGAAGTTTGCAGTATTAATCCAGTATGTGCCAAGGCTTTTGCGgatctatccactattcaaagaagttactagaacttctggaatattgactcagacagcatgggctggagctgcttctaatctttttctctatatgctagcaagtcatGTGGTTGGAGCTAACTGGTATATGCTTTCGGTAGAGTCAGAGGTGCGGTGCTGGCGCAGAGAGTTGAAGAAAGCTTCACTCTTTCATCAAAATTACACGAGTTGTGGAGTTCGAGATAATGAAGTTCTTTCCCATCTTCGTAGAAATTGTTCTTTCGTTGATCCTGATAAAATCACAGACAGAAACACCTTCAACTTTGGAATATATTTTGATGCTCTAGATTCAGGTGTGGTAGAATATACAACAGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTGCTCTTGGACAAAATCTCAAGACAAGTACTTATGTTCCGGAGATAGCCTTTGCAATCTTCATTGGCATCTTTGGATTGTTTTTATTCTCGTTGCTCATCGGAAACATGCAGAAATATCTGCAATCTACAACTGTTAGAGTGGAGGAGATGAGAGTGAAGAGACAGGATGCAGAACAGTGGATGTCCCACCGTATGCTACCCGAGAACTTGAAGGAAAGAATTAGACGGTATGAACAGTACCAATGGCAAGAAAATAGGGGTGTTGAGGAGGAAGCATTAATTCGTAACCTTCCTAAAGATCTCAGAAGGGACATAAAGCGTCACCTTTGCTTAGCTTTAGTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGCAATAGACTTAAGCCAGTCCTTTACACTGAGAAGAGTCAAATTGTTCGTGAAGGAGATCCAGTTGATGAGATGCTTTTCATAATGCGTGGAAAAGTTTCTACTATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTGTTTCTCATGGCCGGTGATTTCTGTGGAGAGGAGCTTCTAACATGGGCCTTGGATCCCCACTCCACCTCAAATCTACCCATTTCAACTAGGACAGTAGAAACTATATCAGAAGTAGAAGCCTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTTCACAGCAAACAGCTCCAACATGCTTTCAGGTTCTATTCCTCACAGTGGAAGACATGGGCTGCCACTTTCATACAAGCAGCGTGGCGTCGGTATTGGAAAAGGAAGATTGAGAAGTCATTGCGCGAAGCAGAAGCCAAGCTACAAGATGCTTTGGCAAATGAGGAGGGGTCTACTCCAAGCCTTGGTGTTACCATGTATGCATCAAGGTTTGCTGCTAATGCACTGCGAACCTTGAGAGAAAATAACAGACACAGTAAAATGCAACAGAGACTGTTACCTCCAAAGCCAGCTGAACCAGATTTCACTGCTCAGAAACACTAA 1611 0.3818 MKKYLTSLFIIDILSIIPLPQVIVLATNPSLGTTDPFVAKELLKFAVLIQYVPRLLRIYPLFKEVTRTSGILTQTAWAGAASNLFLYMLASHVVGANWYMLSVESEVRCWRRELKKASLFHQNYTSCGVRDNEVLSHLRRNCSFVDPDKITDRNTFNFGIYFDALDSGVVEYTTDFPQKFFYCFWWGLRNLSALGQNLKTSTYVPEIAFAIFIGIFGLFLFSLLIGNMQKYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLKERIRRYEQYQWQENRGVEEEALIRNLPKDLRRDIKRHLCLALVKKVPMFEKMDEQLLDAMCNRLKPVLYTEKSQIVREGDPVDEMLFIMRGKVSTMTTNGGRTGFFNSLFLMAGDFCGEELLTWALDPHSTSNLPISTRTVETISEVEAFALMADDLKFVASQFRRLHSKQLQHAFRFYSSQWKTWAATFIQAAWRRYWKRKIEKSLREAEAKLQDALANEEGSTPSLGVTMYASRFAANALRTLRENNRHSKMQQRLLPPKPAEPDFTAQKH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03147 536 ProSiteProfiles IQ motif profile. 447 476 IPR000048 GO:0005515
Cca03g03147 536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 1 534 - -
Cca03g03147 536 Coils Coil 463 483 - -
Cca03g03147 536 Pfam Ion transport protein 2 239 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca03g03147 536 Pfam Cyclic nucleotide-binding domain 332 421 IPR000595 -
Cca03g03147 536 SUPERFAMILY cAMP-binding domain-like 240 436 IPR018490 -
Cca03g03147 536 CDD CAP_ED 311 442 IPR000595 -
Cca03g03147 536 MobiDBLite consensus disorder prediction 513 536 - -
Cca03g03147 536 Gene3D Jelly Rolls 309 429 IPR014710 -
Cca03g03147 536 SMART cnmp_10 311 442 IPR000595 -
Cca03g03147 536 SUPERFAMILY Voltage-gated potassium channels 2 233 - -
Cca03g03147 536 ProSiteProfiles cAMP/cGMP binding motif profile. 311 395 IPR000595 -
Cca03g03147 536 Gene3D Helix hairpin bin 238 302 - -
Cca03g03147 536 Gene3D - 1 235 - -
Cca03g03147 536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03147 Cca-Chr3 52900583 52907652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03147 2 533 Ion Channels AT5G53130 67.463 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03147 K05391 - gmx:100797784 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03147 03 52900583 52907652 Cca03g03147 03 52900583 52907652 ECH
Cca03g03147 03 52900583 52907652 Cca11g00595 11 9597118 9602646 PCT