Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03140 ATGGGTGAGAGCACCAAGAGGAAACACACTACTCTCATCCATGAACTAATCCAAGGAAAAGAGCTAGCAAAGCAGCTGAGTAACCTAATGGTTTCTTCTTCTCCATTGACCAATGAAACCAATGGATTGTTGGTTGAGAAAATACTTTCGTCCTATGAGAAAGCTCTCACCATGCTGAACAAGACCAACACCATGATGGATTCCAATTCTTCTTTTACAAATGGTGGGAGCCCCAGAAGCGAGGTTGTGGATCATGAATTTGAGCACAAAGCTGTCTTCAAGAAAAGAAAGACCATGCCCAGATGGACAGAGCAAGTGAAGATTTGTTCAAGAACTGGACTTGAGGGGTCTTTGGATGATGGATATAGCTGGAGAAAATACGGGCAGAAGGATATCCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTACAAGGGTGCCTGGCAACAAAGCAAGTTCAAAGATCAGATGAAGACCCAACAACAATTGAGGTGACCTACAGAGGAAGACATACATGCACGCATGCTAAGCATTTAAACAAAGCATACCCATCAAACATAAAGATGGATTTGAAGGAAAATCATTTCCACAATGATCAAAAGAATCAAACACTACAAGAGAAAATACAACAAACTCCAGAGGGGATTTTTACATTTGAAACAGAACTTAAAGTCAAAACTGAGGAAATGGAAACCAAAGAGGATATCTTCCCGTGGTTTTGCTTTTCTTCTCCATCATTTGGATCAGAAAACGAGGACAATATGTTACACGAAAGCATGATTGAAAACCATTTCATGGAAATTTTTTCTCCTGCATTCATATCACCAGCAACTTCAGAATCAAAGCCTTTCTGTTTGCCAGCATATGACTTGGACAGCACTGGACTATTGTGCCAAAACATACAAACCTCGGAATCTGATATCACTGAGATACTTTCAGCCCCGACTTCAGTCACCAACTCCCCAATCCTGGATTTGGATATCCTGCTTCATAAACGGGATTTTGACACTGAGTTCCCTTTCAACACCCTTGAATTTTTCTCTTCGTGA 1065 0.4075 MGESTKRKHTTLIHELIQGKELAKQLSNLMVSSSPLTNETNGLLVEKILSSYEKALTMLNKTNTMMDSNSSFTNGGSPRSEVVDHEFEHKAVFKKRKTMPRWTEQVKICSRTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTHAKHLNKAYPSNIKMDLKENHFHNDQKNQTLQEKIQQTPEGIFTFETELKVKTEEMETKEDIFPWFCFSSPSFGSENEDNMLHESMIENHFMEIFSPAFISPATSESKPFCLPAYDLDSTGLLCQNIQTSESDITEILSAPTSVTNSPILDLDILLHKRDFDTEFPFNTLEFFSS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03140 354 SUPERFAMILY WRKY DNA-binding domain 117 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g03140 354 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 347 IPR044810 GO:0003700
Cca03g03140 354 ProSiteProfiles WRKY domain profile. 113 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g03140 354 SMART WRKY_cls 118 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g03140 354 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 347 - -
Cca03g03140 354 Pfam WRKY DNA -binding domain 119 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g03140 354 Gene3D WRKY domain 105 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03140 Cca-Chr3 52839418 52841144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03140 16 189 WRKY Transcription Factor Family AT5G24110 46.552 9.07e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g03140 WRKY 5.2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03140 - - gmx:100790050 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03140 03 52839418 52841144 Cca06g01849 06 33886761 33887991 ECH
Cca03g03140 03 52839418 52841144 Cca03g03140 03 52839418 52841144 ECH
Cca11g00608 11 9857490 9860278 Cca03g03140 03 52839418 52841144 ECH
Cca06g01849 06 33886761 33887991 Cca03g03140 03 52839418 52841144 ECH
Cca03g03140 03 52839418 52841144 Cca11g00608 11 9857490 9860278 PCT