Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g03140 | ATGGGTGAGAGCACCAAGAGGAAACACACTACTCTCATCCATGAACTAATCCAAGGAAAAGAGCTAGCAAAGCAGCTGAGTAACCTAATGGTTTCTTCTTCTCCATTGACCAATGAAACCAATGGATTGTTGGTTGAGAAAATACTTTCGTCCTATGAGAAAGCTCTCACCATGCTGAACAAGACCAACACCATGATGGATTCCAATTCTTCTTTTACAAATGGTGGGAGCCCCAGAAGCGAGGTTGTGGATCATGAATTTGAGCACAAAGCTGTCTTCAAGAAAAGAAAGACCATGCCCAGATGGACAGAGCAAGTGAAGATTTGTTCAAGAACTGGACTTGAGGGGTCTTTGGATGATGGATATAGCTGGAGAAAATACGGGCAGAAGGATATCCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTACAAGGGTGCCTGGCAACAAAGCAAGTTCAAAGATCAGATGAAGACCCAACAACAATTGAGGTGACCTACAGAGGAAGACATACATGCACGCATGCTAAGCATTTAAACAAAGCATACCCATCAAACATAAAGATGGATTTGAAGGAAAATCATTTCCACAATGATCAAAAGAATCAAACACTACAAGAGAAAATACAACAAACTCCAGAGGGGATTTTTACATTTGAAACAGAACTTAAAGTCAAAACTGAGGAAATGGAAACCAAAGAGGATATCTTCCCGTGGTTTTGCTTTTCTTCTCCATCATTTGGATCAGAAAACGAGGACAATATGTTACACGAAAGCATGATTGAAAACCATTTCATGGAAATTTTTTCTCCTGCATTCATATCACCAGCAACTTCAGAATCAAAGCCTTTCTGTTTGCCAGCATATGACTTGGACAGCACTGGACTATTGTGCCAAAACATACAAACCTCGGAATCTGATATCACTGAGATACTTTCAGCCCCGACTTCAGTCACCAACTCCCCAATCCTGGATTTGGATATCCTGCTTCATAAACGGGATTTTGACACTGAGTTCCCTTTCAACACCCTTGAATTTTTCTCTTCGTGA | 1065 | 0.4075 | MGESTKRKHTTLIHELIQGKELAKQLSNLMVSSSPLTNETNGLLVEKILSSYEKALTMLNKTNTMMDSNSSFTNGGSPRSEVVDHEFEHKAVFKKRKTMPRWTEQVKICSRTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTHAKHLNKAYPSNIKMDLKENHFHNDQKNQTLQEKIQQTPEGIFTFETELKVKTEEMETKEDIFPWFCFSSPSFGSENEDNMLHESMIENHFMEIFSPAFISPATSESKPFCLPAYDLDSTGLLCQNIQTSESDITEILSAPTSVTNSPILDLDILLHKRDFDTEFPFNTLEFFSS | 354 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g03140 | 354 | SUPERFAMILY | WRKY DNA-binding domain | 117 | 179 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cca03g03140 | 354 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 1 | 347 | IPR044810 | GO:0003700 | |
Cca03g03140 | 354 | ProSiteProfiles | WRKY domain profile. | 113 | 176 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cca03g03140 | 354 | SMART | WRKY_cls | 118 | 180 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cca03g03140 | 354 | PANTHER | WRKY TRANSCRIPTION FACTOR 41-RELATED | 1 | 347 | - | - | |
Cca03g03140 | 354 | Pfam | WRKY DNA -binding domain | 119 | 178 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cca03g03140 | 354 | Gene3D | WRKY domain | 105 | 181 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g03140 | Cca-Chr3 | 52839418 | 52841144 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g03140 | 16 | 189 | WRKY Transcription Factor Family | AT5G24110 | 46.552 | 9.07e-50 | 167 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Cca03g03140 | WRKY | 5.2e-27 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g03140 | - | - | gmx:100790050 | 580.867 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g03140 | 03 | 52839418 | 52841144 | Cca06g01849 | 06 | 33886761 | 33887991 | ECH | |
Cca03g03140 | 03 | 52839418 | 52841144 | Cca03g03140 | 03 | 52839418 | 52841144 | ECH | |
Cca11g00608 | 11 | 9857490 | 9860278 | Cca03g03140 | 03 | 52839418 | 52841144 | ECH | |
Cca06g01849 | 06 | 33886761 | 33887991 | Cca03g03140 | 03 | 52839418 | 52841144 | ECH | |
Cca03g03140 | 03 | 52839418 | 52841144 | Cca11g00608 | 11 | 9857490 | 9860278 | PCT |