Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03125 ATGGAATCCAAATTGAGTGAGCAAAAAGTTGTCACTTACAAGCATGTCAAACCTTCCATTGTGAAGGCACTACCAAAGGTAGTTCGTATTTCAGTGACGGACCCGTATGCCACAGATGATGAAGATGAGGATGAAGATGAAGGGTTGGTTAGAATCAAGAAGTTTGTAAACGAGATCAGAATGGTGGATAATCACTGTTCAACTAACACTGAGTCCCCTGTTCATGTGAAACATCACCACAAGGAGAGAGTCATCACAGCAAAAACTGAGAAAGGTAATGGAAGAAAGTTTAGAGGAGTTCGTCAAAGGCCATGGGGAAGATGGGCTGCAGAAATCAGAGATCCTGTGAAGAGGACAAGAGTGTGGTTAGGGACTTATGACACTCCTGAAGAAGCTGCCATGGTTTATGACAAAGCAGCTATAAACTTTAGAGGCTCTAATGCTCTCACTAACTTCATCAAGCCTCCTACAAGTGAAGAAAACATCAACACTGATGTTGTTTTTGATTATGGTCTTAATGAATCTGAAGATAGTGTGAGTGGTTTGGTTGAGAATGAGAATGTGAGTAGTGGGAATGATTCAAGCAAAGAGTCTCATTTGCCTTCACCAACTTCTGTGCTTGGATTTCGACATTTTATGTTGGAGGAGATTTCTGAAACAGATGGTGTGATCAGAGAGGACCCAAGTTTGCTAGATAGTTTTTTGTTTTCAGATTCATCATCCATTGATAGTTATTTCAATTTTGAAACTCCTCCACCAGTTTTTCTTCATGAAACTAGTGCGACGGAACCTGTTTTTCATGACAATTTCAGTGATATTTCCCATCTTGTCAGTAAGGATTTTCAATTTTGTAATTGGGATATAGATAGTTACTTCAATGATCTTTTTCAGTGA 894 0.3937 MESKLSEQKVVTYKHVKPSIVKALPKVVRISVTDPYATDDEDEDEDEGLVRIKKFVNEIRMVDNHCSTNTESPVHVKHHHKERVITAKTEKGNGRKFRGVRQRPWGRWAAEIRDPVKRTRVWLGTYDTPEEAAMVYDKAAINFRGSNALTNFIKPPTSEENINTDVVFDYGLNESEDSVSGLVENENVSSGNDSSKESHLPSPTSVLGFRHFMLEEISETDGVIREDPSLLDSFLFSDSSSIDSYFNFETPPPVFLHETSATEPVFHDNFSDISHLVSKDFQFCNWDIDSYFNDLFQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03125 297 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Cca03g03125 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 3 295 - -
Cca03g03125 297 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 295 - -
Cca03g03125 297 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Cca03g03125 297 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Cca03g03125 297 SUPERFAMILY DNA-binding domain 96 152 IPR016177 GO:0003677
Cca03g03125 297 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
Cca03g03125 297 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Cca03g03125 297 MobiDBLite consensus disorder prediction 182 202 - -
Cca03g03125 297 Gene3D AP2/ERF domain 95 154 IPR036955 GO:0003700|GO:0006355
Cca03g03125 297 CDD AP2 96 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03125 Cca-Chr3 52707499 52708392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03125 1 294 AP2-EREBP Transcription Factor Family AT2G46310 36.422 2.17e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g03125 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03125 - - ccaj:109796536 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03125 03 52707499 52708392 Cca03g03125 03 52707499 52708392 ECH