Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03120 ATGGGAAACAATGAGGAAGAAAAATCTACCAAGACTGAAAAGCCTTCTTCACCTGTAGTGGATCAGGCCAATCAGACCAATATTCATGTCTATCCTGATTGGGCAGCCATGCAGGCATATTATGGACCAAGAATGACCATGCCACCATACTACAACTCGGCTGTGGCTTCTGGTCATGCACCTCACCCGTACATGTGGGGGCCACCTCAGCCTATGATGCCACCTTATGGGCCTCATTATGCTGCAATTTATCCACATGGAGGTGTTTATCCTCACCCTGCAGTTCCTATTGGGCCACATCCACATAGTCAAGGAGTTCCGTCTTCACCTGCTGCTGGGACTCCTTTAAGCATTGAGACAGCACCTAAATCATCTGGAAATACTGATCAGGGTTTAATGAAGAAATTGAAAGAGTTTGatggacttgcaatgtcaataggcaatggccatgCTGAAAGTGCAGAGCATGGAGGTGAAAACAGGCTGTCACAGAGTGTGGATACCGAGGGTGGCTCCAGTGATGGAAGTGATGGCAACACTTCAGGGGCTAATCAAACAAGAAGGAAAAGAAGCCGTGAGGGAACACCAACCACTGATGGAGAAGGGAAAACTGAGATACAAGGCAGTCCCGTTTCCAAAGAGAAGACGGCAGTTGTACCTGTAACTGTTGCAGGAAATATAGTTGGACCTATAGTTTCTTCAGGTATGACCACTGCCCTGGAGCTGAGAAACCCTTCCAGTGTTCATTCTAAATCAAATGCCACAAGTGCCCCACAACCTTGTTCCGTATTGCCTGCAGAAGCTTGGTTACAGAATGAGCGGGAGCTGAAACGTGAGAGGCGGAAACAATCAAATCGAGAATCTGCTAGAAGGTCCAGACTAAGGAAGCAGGCTGAAACTGAAGAACTGGCACGAAAAGTTGAATCCTTGAATGCGGAGAACGTGACACTGAAATCAGAAATAAATCGACTGACCGATAGTTCTGAAAAAATGAGGGTGGAAAATGCTGCATTAAGGGAAAAACTTAGAAATGCTCATCAATTGGGACCAACACAAGAGATAACTTTGAATATAATTGACAGCCAGAGGGCTACACCTATAAGTACAGAAAACTTACTATCAAGAGTTAATAATAATTCAAGTTCTAATGATAGAACTGCGGAGGATGAGAATGATTTTTGTGAAAATAAACCAAACTCTGGTGCAAAGCTGCATCAACTGCTGGACACAAGTCCTAGAGCTGATGCTGTGGCAGCTGGTTGA 1263 0.4386 MGNNEEEKSTKTEKPSSPVVDQANQTNIHVYPDWAAMQAYYGPRMTMPPYYNSAVASGHAPHPYMWGPPQPMMPPYGPHYAAIYPHGGVYPHPAVPIGPHPHSQGVPSSPAAGTPLSIETAPKSSGNTDQGLMKKLKEFDGLAMSIGNGHAESAEHGGENRLSQSVDTEGGSSDGSDGNTSGANQTRRKRSREGTPTTDGEGKTEIQGSPVSKEKTAVVPVTVAGNIVGPIVSSGMTTALELRNPSSVHSKSNATSAPQPCSVLPAEAWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLNAENVTLKSEINRLTDSSEKMRVENAALREKLRNAHQLGPTQEITLNIIDSQRATPISTENLLSRVNNNSSSNDRTAEDENDFCENKPNSGAKLHQLLDTSPRADAVAAG 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03120 420 Coils Coil 266 286 - -
Cca03g03120 420 MobiDBLite consensus disorder prediction 158 185 - -
Cca03g03120 420 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 275 338 IPR004827 GO:0003700|GO:0006355
Cca03g03120 420 Pfam Disordered region downstream of MFMR 129 252 - -
Cca03g03120 420 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 280 295 IPR004827 GO:0003700|GO:0006355
Cca03g03120 420 Gene3D - 276 331 - -
Cca03g03120 420 MobiDBLite consensus disorder prediction 374 420 - -
Cca03g03120 420 CDD bZIP_plant_GBF1 278 325 IPR045314 GO:0003700|GO:0006355
Cca03g03120 420 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Cca03g03120 420 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 420 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cca03g03120 420 Pfam bZIP transcription factor 273 335 IPR004827 GO:0003700|GO:0006355
Cca03g03120 420 MobiDBLite consensus disorder prediction 275 303 - -
Cca03g03120 420 MobiDBLite consensus disorder prediction 95 131 - -
Cca03g03120 420 PANTHER G-BOX-BINDING FACTOR 3 1 420 - -
Cca03g03120 420 SMART brlzneu 273 337 IPR004827 GO:0003700|GO:0006355
Cca03g03120 420 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g03120 420 MobiDBLite consensus disorder prediction 107 131 - -
Cca03g03120 420 MobiDBLite consensus disorder prediction 148 215 - -
Cca03g03120 420 SUPERFAMILY Leucine zipper domain 276 331 IPR046347 GO:0003700|GO:0006355
Cca03g03120 420 Coils Coil 293 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03120 Cca-Chr3 52661179 52668080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03120 1 420 bZIP Transcription Factor Family AT2G46270 50.816 2.50e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca03g03120 MFMR_assoc 6.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03120 K09060 - gmx:100781875 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03120 03 52661179 52668080 Cca03g03120 03 52661179 52668080 ECH