Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03105 ATGAATTGTTTTCCGTGTTTTTCAAAGAGTAAGAAAAGCAGCAACAAGAAGGAACCACAAGGGCCTACACCACATGAAACCGTTGTAACAACAAAAGCACCTACGGATGTAAAGAAACCAAAGCCAGACGAACCAACAAACCAAGTTGATACTACTACGACTATTCAAGCACAAAATTTCACATTCCGTGAGCTGGCAATTGCAACAAAGAATTTCCGCCAAGAAAGTTTGCTGGGTGAAGGTGGCTTTGGCAGAGTTTATAAGGGGACAATTCCTGCAACTGGACAGGTGGTAGCAGTGAAGCAACTAGACCGAAATGGGATGCAAGGTAGTAAGGAATTTCTGGCTGAGGTTTTGTCGTTAAGTCTCTTGAGCCATGAAAATCTGGTCAAATTTACTGGTTATTGTGCTGATGGAGATCAACGTCTTTTGGTGTATGAGTTCATGCCCGGAAACTCTTTAGAACACCGCCTTCTTGAGAGGAAAGCAGATGAACCTCCTTTAGATTGGTACAGCAGAATGAAAATAGCATCAAATGCCGCGAAAGGACTATGGTACTTGCACGACAAAGCAAGTCCTGCAGTTATATACCGGGACTTGAAATCCTCGAACATCTTGCTGGATAATGATCACAATGCAAAACTATCTGATTATGGACTGGCCAAACTTGCTGGTAAAGATAAGATGAACATTGTACCCACAAGAGTTATGGGAACCTATGGTTACAGTGCTCCGGAGTACGTAAGAACAGGTAACCTCACCTTGAAATCAGATGTGTACAGTTTTGGAGTTGTCTTGCTAGAGCTCATAACTGGACGGCGTGCCGTTGACACCACAAGGCCCCACGATGAGCAAAATCTTGTTTCATGGGCACAACCCATATTCAGGGACCCAAAGAGATATCCAGATATGGCAGATCCAAATCTGAACAAAAATTTCCCGGAAAAGGATCTGAACCAAGTTGTTGCAATTGCAGCCATGTGCTTGCAGGAGGAAGCAGCAGCCCGTCCTTTGATGAGTGATGTTGTGACTGCTCTCAGTTTTCTTTCCACCACTCCTCCAGATGAGATTTCTCAAAAACAGGTTAGTGCAAAATACACAGAAAGTGAAGAGGCCTCAGAATCTGAGTATGGTTATGATGAGAATGAAAACCAACATAATTACAGTCCACAAGACATTAAGGAGACCAAGGAGTACTACTCCAAATCAAGTGGCAAGAGCAGAAGCAGTTATAGTTCAGATTCAGAAAACGGAAGCAGTAGGAAAAGCATCATGAAATCTTCCTTGAGACAAAAGAGCAGTAAAAAATCTTCTGCGAGCCAAAAAAGCAGCAAAAGGTCTTCTGTGAGAGTGTTAAGTCACAAGGGGTCCGTCAGTTCATCCTATAGCAGCAATGAAGATGGTGGTGGTGATCTTTTCCAGCGTAGTGGAAGCAGGCCATCAGAAGGGAATGTTTCAATTGGCCTAATCAGCAGCGAGAGTGTTCTGTCAGACAATGACAGCAGCTTAAGGTCCAGGGAAAGGAGCAGCATTCATTTAGATCATAGCATCAGCAGGGAATCAGAGGAGGGAAGTGTTCATTATCGATAG 1590 0.4358 MNCFPCFSKSKKSSNKKEPQGPTPHETVVTTKAPTDVKKPKPDEPTNQVDTTTTIQAQNFTFRELAIATKNFRQESLLGEGGFGRVYKGTIPATGQVVAVKQLDRNGMQGSKEFLAEVLSLSLLSHENLVKFTGYCADGDQRLLVYEFMPGNSLEHRLLERKADEPPLDWYSRMKIASNAAKGLWYLHDKASPAVIYRDLKSSNILLDNDHNAKLSDYGLAKLAGKDKMNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRPHDEQNLVSWAQPIFRDPKRYPDMADPNLNKNFPEKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTTPPDEISQKQVSAKYTESEEASESEYGYDENENQHNYSPQDIKETKEYYSKSSGKSRSSYSSDSENGSSRKSIMKSSLRQKSSKKSSASQKSSKRSSVRVLSHKGSVSSSYSSNEDGGGDLFQRSGSRPSEGNVSIGLISSESVLSDNDSSLRSRERSSIHLDHSISRESEEGSVHYR 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03105 529 SMART serkin_6 72 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03105 529 Gene3D Transferase(Phosphotransferase) domain 1 149 374 - -
Cca03g03105 529 Gene3D Phosphorylase Kinase; domain 1 43 148 - -
Cca03g03105 529 SUPERFAMILY Protein kinase-like (PK-like) 58 369 IPR011009 -
Cca03g03105 529 MobiDBLite consensus disorder prediction 387 402 - -
Cca03g03105 529 CDD STKc_IRAK 78 346 - -
Cca03g03105 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Cca03g03105 529 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Cca03g03105 529 MobiDBLite consensus disorder prediction 500 529 - -
Cca03g03105 529 MobiDBLite consensus disorder prediction 356 529 - -
Cca03g03105 529 MobiDBLite consensus disorder prediction 403 499 - -
Cca03g03105 529 ProSiteProfiles Protein kinase domain profile. 72 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03105 529 PANTHER OS07G0668900 PROTEIN 1 357 - -
Cca03g03105 529 PANTHER RECEPTOR KINASE-LIKE PROTEIN 1 357 - -
Cca03g03105 529 MobiDBLite consensus disorder prediction 1 49 - -
Cca03g03105 529 Pfam Protein kinase domain 73 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03105 Cca-Chr3 52550337 52553810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03105 1 358 Glycoside Hydrolase AT3G07070 62.228 2.63e-160 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca03g03105 Pkinase 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03105 - - gmx:100807682 704.131