Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03104 ATGAAAATAAAAACCCATTTACATCACCACCTTTTGTTGGCATTTTTATTCCTTACAACCCTCCCAGAGAATTCCTCACTCCTATCTCCTGCACCCAATGATGCACAAGGTACATGTGTGCTGAATTTCAATACGACACAATATGTGACATTTGGTGAGTGCAGCAGTGTGAAAGACGACATAAACAAATGGGGTGAGGACGGGTTTCCTACCACCTTGTGCTGTCGAAATGCTCTCTCGGTTTTGTCCAATGCATTGGCCTCGCAAGCCCTTAACTCAACATCACAATTGTTCATTTCCCAAGATGAATTACAGAGTTGCACAGAGTCATTTCATCCGCAACAAGGGATGTCACTCGATTCATGTGGCTTTGACAACTTGTCCCAAGGCAGTTGCAGATGCTCCAACTTAGTTTTGCAGGAAGTTCGAAACGTGCAACACTACCAAGACGCGTTGGACAAGTGCTCCCACTTCGATCAACCCCTTGATCACTCTTGTGCAGATTGCACTGGTGCAGTGTTTAGCTTGATAAATAGTTTATATGCTGAAGATGCCAAGGGAAAGAACGGTACTGAGAAAGCCATATGTGCGGTGGCAACTATTGTTGCTCTTGCAACTAACGATCCTTCCATCATTGACAAAGTCTTACGTTGCTTCCCTGATTCAGAAACAAACAAGAGATCTATGGTGAAACCCTTGTTGAGTGTGGTAGTGGTTGTCCTTGCAATATTTCTTGTGATTCTTATGGTCAAATGTTTGTCCAAGAAGAAGGCTCATAGGAAGGTTTACTTGAAAGAGATCACTACATGGTCTGGATTGTACTGGTTCTCCCATACTGAAATTGAGAATGCCATGAACTATGGTGGTGAAAAGATAAGCCTTGGACGTGGGAGTGCGGGCCAGGTGTATAGAGGGGTTCTTCCCAGTGGTCAAGTTGTGGCCATCAAGCATTTGACAAAGAGTAACACCTCTGAGTCTTTCACTCGAGAAGTTGAAGGCCTTTCCAGGCTTCGTCATCCAAACTTGGTGTGTCTCTTTGGATGTTGCATAGAAGGGGATGACAGATATTTAGTCTATGAATTTTGTGCAAATGGGAATCTTGCTCAACATCTCTTAAGAAGAGATAGCCACTTGACATGGGAAACAAGAGTCAGAATTTTGAGAGATTGTTCATTTGCACTCAAGTACCTCCACCATCATATAGAAGGTTGCGTTGTTCACAGAGATATAAAGCTTACGAATATTCTTTTGACTGAGAAATACCAAGCCAAACTGTCGGATTTTGGACTGGCAAAGGTGATGGGGATTAAAGAGAGCAAGGTTTTTACTGATGTCAGAGGAACCATAGGCTACATGGATCCAGAGTACATGAGTAATGCCAAGCTAACCTGCGCCAGTGATGTATACAGTTTTGGTATTGTTGCTCTACAAATTTTGTCAGGACAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGATCAACTCACTAGGAAGGCAAGAGATGTGAGTATGGGAAAACGTCCACTCTCTGATTTTGAAGACCCCCGGCTAAATGGAAAAATTGATAAGGCAGACTTTGAGGCCATCCTACAGATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGACCAACCATTGAGGTTGTTTTTGAAGAATTGGACAAGGTTTGCAAGGACATGGAAACCCGGATGAAGCCAAAGCAGGATGAGAGTTCATCAACAATATCCACCCCAAGCTCCAAATCCTCCAAATGA 1758 0.4329 MKIKTHLHHHLLLAFLFLTTLPENSSLLSPAPNDAQGTCVLNFNTTQYVTFGECSSVKDDINKWGEDGFPTTLCCRNALSVLSNALASQALNSTSQLFISQDELQSCTESFHPQQGMSLDSCGFDNLSQGSCRCSNLVLQEVRNVQHYQDALDKCSHFDQPLDHSCADCTGAVFSLINSLYAEDAKGKNGTEKAICAVATIVALATNDPSIIDKVLRCFPDSETNKRSMVKPLLSVVVVVLAIFLVILMVKCLSKKKAHRKVYLKEITTWSGLYWFSHTEIENAMNYGGEKISLGRGSAGQVYRGVLPSGQVVAIKHLTKSNTSESFTREVEGLSRLRHPNLVCLFGCCIEGDDRYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSFALKYLHHHIEGCVVHRDIKLTNILLTEKYQAKLSDFGLAKVMGIKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLNGKIDKADFEAILQIAVLCVAKSSKGRPTIEVVFEELDKVCKDMETRMKPKQDESSSTISTPSSKSSK 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03104 585 MobiDBLite consensus disorder prediction 562 585 - -
Cca03g03104 585 ProSiteProfiles Protein kinase domain profile. 288 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03104 585 SUPERFAMILY Protein kinase-like (PK-like) 269 554 IPR011009 -
Cca03g03104 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Cca03g03104 585 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 40 49 566 - -
Cca03g03104 585 Pfam Protein kinase domain 293 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03104 585 Gene3D Phosphorylase Kinase; domain 1 248 361 - -
Cca03g03104 585 Gene3D Transferase(Phosphotransferase) domain 1 362 583 - -
Cca03g03104 585 PANTHER OS01G0253100 PROTEIN 49 566 IPR045271 GO:0004714|GO:0006468
Cca03g03104 585 Pfam SPARK 35 184 IPR043891 -
Cca03g03104 585 MobiDBLite consensus disorder prediction 570 585 - -
Cca03g03104 585 SMART serkin_6 288 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03104 Cca-Chr3 52543410 52546956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03104 294 577 Receptor kinase-like Gene Family AT1G51800 41.156 4.35e-57 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Cca03g03104 Pkinase 9.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03104 - - gmx:100790391 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03104 03 52543410 52546956 Cca01g02316 01 51628296 51631435 PCT