Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03098 ATGGCGAAGAGGGAGCGAGAGAGAGGAGTGTCGGCGTCGGAATTGAAGGACAAGTTGCGAGAATTGGTGAAGGCCATCGTGGACTCCGACGACTACACGCTTGAAGCCGCCGACGAAGCCATCGCCAGCCTTTCAGCTCTCAAGAATTTAAAGTCTCTCCATCACGCTCCCATTCCTCCTCCCCAATTTCGATGCCCCATTTCCACCCAATTGATGACCGATCCCGTTATCTTGTCCACCGGCCAGACTTATGATAGGCCATTTATTGAGAGGTGGTTGAATGAGGGGCACAGAACGTGCCCTCAGACCCAGCAGGTTCTATCTCACTCTATTTTAACTCCGAATTACTTGGTCCGAGACATGATTGTGCAGTGGTGTAGGGAGCGTGGAATTCAGTTGCCTAAGCCTGTTAAGGATGTGGACCAAGTTGTCACCAATGCAGACAGAAACCGTTTGAATTCCTTGCTCCGCAAGTTGTCATTGTCTGCTTCTGATCAGAAGGAAGCTGCCAAAGAGCTTCGCCAGTTGACAAAGCGAATGCCGTCGTTTCGAACCCTTGTTGGGGAGTCCACTGATGTCATTCCCCAGCTGCTCAGTCCACTGTCGTCGCCGGGCACTGACCCTGATCTCCATGAGGACTTGATCACCACGGTTTTGAATCTCTCAATCCATGATGATAATAAGAAGGTCTTTGCAGAGGATCCTGCTGTGATTTCTCTGCTTATTGATGCCTTAAAATGTGGAACGCTTCAAACAAGAAGCAATGCTGCAGCCGCCATTTTTACATTGTCTGCTCTTGATGACAACAAGCACATCATCGGGAAATCCGGGGCTATCAAGCCTTTGCTTGAGCTTTTGGATGAGGGAGAGCCTTTTTCCATGAAAGATGCTGCTTCGGCTGTATTCAATTTGTGTCTTGTGCATGAGAATAAAGGGAGGACCGTTCGAGATGGGGCCGTTCGGGTTATTCTGAACAAGATGATGGACCACATTCTGGTTGATGAGTTGTTGGCTATACTGGCACTGCTCTCCAGCCATCCCAAGGCTGTTGAGGAAATGGGTGATCTAGGCTGTGTTCCTTTGTTATTGGGGATTATTAGGGAGAGCACCTCAGAGAGGAGCAAGGAAAATTGTGTTGCAATTCTCTACACAATCTGTTTTAGTGACAGAACAAAGTTGAAGGAAATTAGAGAAGAGGAAAAGGCCAATGGTACACTGTCCAAGCTTGCACAATGTGGAACTTCAAGGGCAAAAAGGAAGGCTAACGGTATTCTTGAGAGGCTTAACAGATCTCCCTACTTAACTCACACTGCTTAG 1317 0.4814 MAKRERERGVSASELKDKLRELVKAIVDSDDYTLEAADEAIASLSALKNLKSLHHAPIPPPQFRCPISTQLMTDPVILSTGQTYDRPFIERWLNEGHRTCPQTQQVLSHSILTPNYLVRDMIVQWCRERGIQLPKPVKDVDQVVTNADRNRLNSLLRKLSLSASDQKEAAKELRQLTKRMPSFRTLVGESTDVIPQLLSPLSSPGTDPDLHEDLITTVLNLSIHDDNKKVFAEDPAVISLLIDALKCGTLQTRSNAAAAIFTLSALDDNKHIIGKSGAIKPLLELLDEGEPFSMKDAASAVFNLCLVHENKGRTVRDGAVRVILNKMMDHILVDELLAILALLSSHPKAVEEMGDLGCVPLLLGIIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKANGTLSKLAQCGTSRAKRKANGILERLNRSPYLTHTA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03098 438 SUPERFAMILY ARM repeat 19 428 IPR016024 -
Cca03g03098 438 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Cca03g03098 438 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Cca03g03098 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 132 IPR013083 -
Cca03g03098 438 CDD RING-Ubox_PUB 63 105 IPR045210 -
Cca03g03098 438 SUPERFAMILY RING/U-box 59 136 - -
Cca03g03098 438 SMART arm_5 224 265 IPR000225 GO:0005515
Cca03g03098 438 SMART arm_5 266 306 IPR000225 GO:0005515
Cca03g03098 438 SMART arm_5 346 387 IPR000225 GO:0005515
Cca03g03098 438 Gene3D - 151 433 IPR011989 -
Cca03g03098 438 Pfam U-box domain 60 129 IPR003613 GO:0004842|GO:0016567
Cca03g03098 438 PANTHER U BOX DOMAIN-CONTAINING 10 436 - -
Cca03g03098 438 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 10 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03098 Cca-Chr3 52505646 52507437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03098 121 438 U-box Gene Family AT3G07360 59.021 2.21e-124 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03098 - - gmx:100806619 721.85