Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03096 ATGATTGTAATGGCTAACAACAAAATTTCAGCGCTGATTGTTGATGATGACTCTATTATTCGCAAAATCCACAAGACGATGCTTGAGCGTTTATTTAACATAGAGGCAGAAACGGTTAAGGATGGAAAGGAAGCAGTGGAACTGTGTCGTTCTGGGGCAAACTTTGACATTATTTTCATGGACAGAGAAATGCCTATCATGGATGGTGCTGAGGCGACAAAACAGTTACGTGCTATGGGAGTGAAGAGCACGATTGTGGGAATCACTACCCGTGCTGGTGGCGAAGATAGAGAGGAATTTCTAGCTGCTGGTTCCAACCATTGCTTTGAGAAGCCTCTTGATCGTGCAAAGGTTGAAGTTGTCTTGCGGGAGCATAAAAAATTTACCATTTGA 393 0.43 MIVMANNKISALIVDDDSIIRKIHKTMLERLFNIEAETVKDGKEAVELCRSGANFDIIFMDREMPIMDGAEATKQLRAMGVKSTIVGITTRAGGEDREEFLAAGSNHCFEKPLDRAKVEVVLREHKKFTI 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03096 130 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 5 126 - -
Cca03g03096 130 Pfam Response regulator receiver domain 12 118 IPR001789 GO:0000160
Cca03g03096 130 Gene3D - 4 128 - -
Cca03g03096 130 SUPERFAMILY CheY-like 7 126 IPR011006 -
Cca03g03096 130 SMART REC_2 9 122 IPR001789 GO:0000160
Cca03g03096 130 ProSiteProfiles Response regulatory domain profile. 10 126 IPR001789 GO:0000160
Cca03g03096 130 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 126 - -
Cca03g03096 130 CDD REC_hyHK_CKI1_RcsC-like 12 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03096 Cca-Chr3 52477826 52478666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03096 9 118 Response Regulator Gene Family AT3G04280 50.000 1.33e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g03096 Response_reg 4.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03096 - - gmx:102665311 210.69