Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03090 ATGTTGAAGCTTTCTCGCGTGCTGCctctcacttccacttccagGCATCGGCTGTTGGAAGCGTTGTCGCCTAGGAAAGTTGAAGTTGGAGACTGTTTGCGGGATCGGCCTGAGTTTACCTCTTCTTCAGCTGGCATTTCTACTGCTGCAAATAGCTATGCTGCTAAAGGGTATACTTCGGATCGTGTATTTGCTCCTTATACTGTTTACAAGGGCAAAGCTGCGTTCTCGTTGAGTCCTTGTCTTCCAACTTTCACTAAGTTGGAGTCTGGGAGTGTTGTAGTTGATCGACGCGGTACAATGATGATGAATTTCATGCATTCTATTGGAGAGCGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTTTCGGCAACTGAAGTTGGTTCTTTGATAACCATGGGCCCCCAAGATTCATGTGAATTCTTTCATGACCCTTCAATGTTATCAAGTAATGCGGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTAACAGCAATGGCTACTTTGTGTCTTTGACTGTTGTCAACAACCTGTTAAACACCAAAGACCAGTTCAGTGTTCCTATCACAGCTGCTGAGTTTGCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAAACAGCAATCCAGAGGCACAGCTGGCCTTCAACCGAAGAGTGGTTCTCAAGTTCTAGACTTGGAATGGGAAAAGTGA 729 0.4362 MLKLSRVLPLTSTSRHRLLEALSPRKVEVGDCLRDRPEFTSSSAGISTAANSYAAKGYTSDRVFAPYTVYKGKAAFSLSPCLPTFTKLESGSVVVDRRGTMMMNFMHSIGERKYDWEKRQRFALSATEVGSLITMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPNSNGYFVSLTVVNNLLNTKDQFSVPITAAEFAVMKTACSFALPHIMGWDQITKQQSRGTAGLQPKSGSQVLDLEWEK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03090 242 SUPERFAMILY ssDNA-binding transcriptional regulator domain 60 220 IPR009044 GO:0003677|GO:0006355
Cca03g03090 242 MobiDBLite consensus disorder prediction 221 242 - -
Cca03g03090 242 Gene3D Transcriptional Coactivator Pc4; Chain A 53 223 IPR009044 GO:0003677|GO:0006355
Cca03g03090 242 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 242 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cca03g03090 242 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 242 - -
Cca03g03090 242 Pfam Whirly transcription factor 69 201 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03090 Cca-Chr3 52359460 52363128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03090 60 242 Whirly Transcription Factor Family AT1G71260 61.579 5.49e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Cca03g03090 Whirly 3.3e-53 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03090 - - var:108343725 402.519