Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03087 ATGGAACCTAATGACAACCAACTGACCTCCTTCTTccaccaccaccaccaccaccaccacACTCACcctcctccccctccgccccagacctccgcctcccccaccaacggcctcctccCCAACGCCGATGCCTCCCACATGCTCTACCCTCACTCCGTCGCCTCCGCCGTTTCCTCCCAGCTCGAGCCCGCCAAGAGGAAGCGCGGCCGCCCCAGGAAGTACGGAACGCCGGAGCAAGCCCTCGCCGCCAAGAAAGCCTCCACCACCTCCTCTCAGTCGTTCTCCGCGGACAAGAAGCCCCACTCTCCCTCCTTCCATTCCTCTTCTTTCGCTTCTAAGAAATCCCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGCTTCACTCCTCATGTCATTTCTGTTGCTGCGGGTGAGGATGTTGGCCAGAAAATCATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGTATCCTGTCAGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACCTACGAGGGTCGGTTTGAGATTATTTCACTAACTGGTTCTTATGTCCGTAATGAACTTGGAACTCGAACTGGTGGTCTCAGTGTATGCCTATCTAATACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCACTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTTTTTATTGACAACAAGAAGGATACTAGTGCTGGTGTAAAAGGTGATGCCTCTGCCAGCAAGTTGCCATCTCCAGTTAGCGAACCAGTATCAAGTTTAGGCTTCCGCCAAACGGTTGACTCTTCCGGTGGAAATCCAATCCGTGGTAATGATGAGCATCAAGCTATGGGGGGAACTCATTTCATGATTCAACAGCTTGGTTTGCATGGGACACCTCCCCGGTCCACAGACTGGGGCCATCCGGATTCAAGAAATACTGGTTTTGAGCTGACAGGAAGGACAGGTCATGGGGCACACCAGTCTCCTGAGAATGGGGGTTATGAACAAATTCCTGATTGA 1053 0.4739 MEPNDNQLTSFFHHHHHHHHTHPPPPPPQTSASPTNGLLPNADASHMLYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTTSSQSFSADKKPHSPSFHSSSFASKKSHSFALGNAGQGFTPHVISVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNELGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDTSAGVKGDASASKLPSPVSEPVSSLGFRQTVDSSGGNPIRGNDEHQAMGGTHFMIQQLGLHGTPPRSTDWGHPDSRNTGFELTGRTGHGAHQSPENGGYEQIPD 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03087 350 MobiDBLite consensus disorder prediction 262 286 - -
Cca03g03087 350 CDD DUF296 128 239 IPR005175 -
Cca03g03087 350 MobiDBLite consensus disorder prediction 55 110 - -
Cca03g03087 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 342 IPR039605 GO:0003680
Cca03g03087 350 MobiDBLite consensus disorder prediction 1 43 - -
Cca03g03087 350 Gene3D - 129 253 - -
Cca03g03087 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 342 - -
Cca03g03087 350 MobiDBLite consensus disorder prediction 304 350 - -
Cca03g03087 350 MobiDBLite consensus disorder prediction 82 110 - -
Cca03g03087 350 MobiDBLite consensus disorder prediction 247 292 - -
Cca03g03087 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 239 - -
Cca03g03087 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 239 IPR005175 -
Cca03g03087 350 ProSiteProfiles PPC domain profile profile. 123 264 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03087 Cca-Chr3 52335931 52340828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03087 41 350 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 51.940 2.68e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03087 - - gmx:100809675 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03087 03 52335931 52340828 Cca03g03087 03 52335931 52340828 ECH