Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03086 ATGGAAAGAGGGTTGTTTCTTATGTTGTTCCTTTTGGTTACGGTGATTTCTGTGTGTGCCATCGATGTGGAATATTCACAGTGCAACTGTGATGAGGAAGGGTTAGGGCTTTGGAGCACACAGAACGTGCTGGTGTGCCAGAAAGTGAGTGACTTTTTCATTGCCATAGCATACTTTTCCATTCCCATTGAGCTTCTTTACTTTGTGAGCTGCTCCAATGTCCCCTTCAAATTGGTCTTCCTTCAATTCATTGCATTCATAGTTCTCTGTGGACTGACTCATTTACTCAATGCTTATACTTACTATGGCCCTCACTCCTTCCAGTTGTTTCTTTCCCTCACTGTTGCTAAGTTCCTCACTGCACTTGTCTCATGTGCCACTGCCATTACCTTTCCCACCCTCATTCCTCTTCTGCTGAAAATCAAAGTGAGGGAGTTATTCTTGAGGAAGAATGTCTTGGAATTGGGGCAAGAGGTTGGGATGATGAAGAAACAGAAGGAAGCTAGTTGGCATGTTAGGATGCTCACATGTGAAATTAGGAAGTCGCTGGATAAGCACACAATCTTGTACACGACCCTTGTTGAGCTTTCCAAGGCATTAGATTTGCACAATTGTGCAGTTTGGATGCCTGATGATTGCAGGAGAGAAATGCATTTGACTCATGAGTTGAAACCAAGCTCAGCAAGGAGTTTTCGCAATTCTATTCCTGTTGGTGACCCTGATGTGTTGGACATTAAAAAGAGCAAAGGGGTTTGGATTTTGAGGCCTGATTCAGCACTAGGAGCAGCAAGTAGTGGTGGTGGATCTGGGGATTCGGGTGCCATTGCAGCCATTCGCATGCCAATACTTCATGTTTCCAATTTCAAAGGAGGGACACCAGAGATGGTTGAAACATCTTACGGTGTGCTGGTTTTGGTTCTTCCAAATTCAAACTCCAGGGCTTGGACCTGCCATGAAATGGAGATAGTGGAAGTGGTTGCTGACCAGGTGGCTGTAGCCTTGTCTCATGCATCTGTGCTTGAAGAGTCTCAGCTTATAAGCCAGAAACTTGCAGAGCAAAACCAGGCGTTGCAACTGGCTCAAAAGAATGCAATGATGGCCAGGAAGGCGAGGAGCTCGTTTGAGAAAGTCATGAGTCATGGAATGCGGAGACCTATGCATTCAATCCTGGGTTTGCTTTCAATGTTTCAAGAGGATAATATAAGATATGAACATAAGATTGTTATCGACTCAATTTTGAAAGTAAGCAATGCACTCTCACGATTGATTAATGATGTCATGGAGATTGCTGCGAAAGACAATGGAAGCTTCCAGCTAGAGATGAAACCTTTCCATCTACATTCAATGATGAGGGAGGCGTCTTGCACTGCCAAGTGTTTGTGTATATATAAAGGCTTTGGTCTTGAAGTTGATGTTGACAAGTCTTTGCCTAATCTGGTCATAGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTACATATGATTGGCTATTTATTGAGCGTATATGATAAAGGAACTCTCATTTTTCAAGTTTATGTTGAAAGTGATGGTGGAGATAAAGATGATAGAAATTTTGGAATATGGAGATCAAGCATGCAAAATGACTACATAAATATAAAGTTTAATTTTCAGATAAATGGTATTAGTTCCCAGTCAGATGAATCAGTTTCAACAAGAATTTACACTGGTAGAAGCTGCAAAAATGAACCTGAGGAAGGCCTGAGCTTCAGCATGTGCAAAACGCTGGTGCAGATGATGCAAGGTAATATTTGGATATCAACTAACTCTCTGGGTTTGGCACAAGGAGTGACACTTCTTCTCAGGTTTCAGACAGGATCATCTCAGGGAAGATTCATTCTTGTACCTAAAGAATTTTCAAATTCCCAGTTTAGAGGGCTTAAGGTTGTATTAGCCGATGATGATGATGTAAACAGGACTGTGACCAAGAAGCTGCTTGAGAAACTTGGATGTCAAGTAACTGCTGTTTCATCAGGATTCGAATGTCTTGGTGCTATGACTGCCTCAGGTAACTCATTCAGAATTATTCTGTTAGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATTCGGAAATTCCAAAGCCATAATTGGCCCTTGATCATAGCTTTTACCGCAAGTGCCGAAGAACACATAAAGGAGAGATGTCTACAGGTGGGAATGAATGGATTGATTAGAAAACCTATCCTCCTTCGTGAGATAGCAGATGAACTTAGAACAGTCCTGGAACGTGCAGGTGAAAATTTGTGA 2280 0.4206 MERGLFLMLFLLVTVISVCAIDVEYSQCNCDEEGLGLWSTQNVLVCQKVSDFFIAIAYFSIPIELLYFVSCSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAITFPTLIPLLLKIKVRELFLRKNVLELGQEVGMMKKQKEASWHVRMLTCEIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDDCRREMHLTHELKPSSARSFRNSIPVGDPDVLDIKKSKGVWILRPDSALGAASSGGGSGDSGAIAAIRMPILHVSNFKGGTPEMVETSYGVLVLVLPNSNSRAWTCHEMEIVEVVADQVAVALSHASVLEESQLISQKLAEQNQALQLAQKNAMMARKARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRYEHKIVIDSILKVSNALSRLINDVMEIAAKDNGSFQLEMKPFHLHSMMREASCTAKCLCIYKGFGLEVDVDKSLPNLVIGDEARSFQVILHMIGYLLSVYDKGTLIFQVYVESDGGDKDDRNFGIWRSSMQNDYINIKFNFQINGISSQSDESVSTRIYTGRSCKNEPEEGLSFSMCKTLVQMMQGNIWISTNSLGLAQGVTLLLRFQTGSSQGRFILVPKEFSNSQFRGLKVVLADDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAMTASGNSFRIILLDLHMPEMDGFEVARRIRKFQSHNWPLIIAFTASAEEHIKERCLQVGMNGLIRKPILLREIADELRTVLERAGENL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03086 759 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Cca03g03086 759 CDD REC_ETR-like 633 748 - -
Cca03g03086 759 ProSiteProfiles Response regulatory domain profile. 634 752 IPR001789 GO:0000160
Cca03g03086 759 ProSiteProfiles Histidine kinase domain profile. 377 613 IPR005467 -
Cca03g03086 759 Gene3D - 162 336 IPR029016 -
Cca03g03086 759 SUPERFAMILY CheY-like 629 754 IPR011006 -
Cca03g03086 759 Gene3D - 633 758 - -
Cca03g03086 759 Pfam GAF domain 186 334 IPR003018 GO:0005515
Cca03g03086 759 Pfam Response regulator receiver domain 635 747 IPR001789 GO:0000160
Cca03g03086 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 439 595 IPR036890 -
Cca03g03086 759 CDD HATPase_ETR2_ERS2-EIN4-like 476 607 - -
Cca03g03086 759 Gene3D - 337 433 - -
Cca03g03086 759 SUPERFAMILY GAF domain-like 187 337 - -
Cca03g03086 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 355 435 IPR036097 GO:0000155|GO:0007165
Cca03g03086 759 Coils Coil 350 370 - -
Cca03g03086 759 SMART gaf_1 184 344 IPR003018 GO:0005515
Cca03g03086 759 Gene3D - 434 613 IPR036890 -
Cca03g03086 759 PANTHER ETHYLENE RECEPTOR 5 752 - -
Cca03g03086 759 SMART REC_2 633 748 IPR001789 GO:0000160
Cca03g03086 759 SMART HisKA_10 370 435 IPR003661 GO:0000155|GO:0007165
Cca03g03086 759 CDD HisKA 369 430 IPR003661 GO:0000155|GO:0007165
Cca03g03086 759 PANTHER TWO-COMPONENT HISTIDINE KINASE 5 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03086 Cca-Chr3 52324054 52327854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03086 22 757 Miscellaneous Gene Families AT3G04580 61.415 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g03086 GAF 1.6e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03086 K14509 - gmx:100805023 1319.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03086 03 52324054 52327854 Cca02g01613 02 34919786 34928770 ECH
Cca03g03086 03 52324054 52327854 Cca03g03086 03 52324054 52327854 ECH