Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03085 ATGGCGAACCAGTGGTGGACCAACACAGTTCCCGTGGGCGCGCTTCAACCCGATCTGGGCCTCTCCCTAAACGACGTCGCGCCGCCACCCAACGAGGAGCCCAAAGAAGGAGCGACGGACGCGTCTTTGCTCGTGTCCACCTCGCGCAGGCCCAGGGGCCGCCCACTGGGCTCCAAGAATAAGCCCAAACCGGCCCAGTGCATGGCCCAAGACACCGCCAACGTGATCGAAAGCCACGTGATCGAGATACCCAACGGAGCTGACATTCACAACAGCCTGATTGAGTTCGCGAGAAGGCGGCAACGAGGCGTGTGCGTCATGAGCGCCACCGGCGCCGTGGCGAACGTGAGGCTCCGGCAGCCCATGCCCCCCGGCGCCGTGATGGTGCTGGAGGGGCGGTTGGGGATTGTGTCGCTGAGCGGTTCGTTTCTTCCCGGAGCGTTAGCGGTGGGTTTAAGCGTTTATGTGGCGGGTGGGCAGGGACACGTCGTCGGAGGCAGAGTGGTGGGTCCACTCGTTGCCTCGGGAAAGGTTATAGTCATTGTGGCTGCGTTTTCCAATGCTTTGTATGAGAGATTACCCATtcaggatgatgacgatgatgatgatgaagacgatgatCCTTCAAATAATATACCAGACATGAACGTTGAACCTTGTTCTCATTGCTCTCTTTCTCGTACCAGATCACCACCCTTTTAA 702 0.5613 MANQWWTNTVPVGALQPDLGLSLNDVAPPPNEEPKEGATDASLLVSTSRRPRGRPLGSKNKPKPAQCMAQDTANVIESHVIEIPNGADIHNSLIEFARRRQRGVCVMSATGAVANVRLRQPMPPGAVMVLEGRLGIVSLSGSFLPGALAVGLSVYVAGGQGHVVGGRVVGPLVASGKVIVIVAAFSNALYERLPIQDDDDDDDEDDDPSNNIPDMNVEPCSHCSLSRTRSPPF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03085 233 MobiDBLite consensus disorder prediction 195 211 - -
Cca03g03085 233 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 197 - -
Cca03g03085 233 MobiDBLite consensus disorder prediction 214 233 - -
Cca03g03085 233 MobiDBLite consensus disorder prediction 195 233 - -
Cca03g03085 233 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 209 IPR014476 GO:0003680
Cca03g03085 233 Gene3D - 77 200 - -
Cca03g03085 233 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 187 IPR005175 -
Cca03g03085 233 MobiDBLite consensus disorder prediction 17 65 - -
Cca03g03085 233 CDD DUF296 79 154 IPR005175 -
Cca03g03085 233 ProSiteProfiles PPC domain profile profile. 73 209 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03085 Cca-Chr3 52318831 52319532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03085 1 216 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 43.825 2.51e-52 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03085 - - ccaj:109795655 428.713