Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03084 ATGCCATTGTTGCGCCTCCTTCATTGTTCAGTACCAATTTCAACCTCAAGCTCTCTGCCAAAGGATCTAAGAAACTCTGTTGTGGTAATCAATATGTCAAAGAATCCGAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGCTGGGCGAGTAGTGATGGAGTTGTATGCTGATGCAACCCCAAAAACGGCAGAAAATTTTAGGGCCCTATGCACCGGTGAGAAAGGGATTGGTCAATCTGGGAAACCTTTACATTACAAAGGGTCTACATTTCATCGTATTATTCCAGATTTTATGTGTCAGGGGGGAGATTTTACGAGAGGAAATGGGACTGGGGGAGAGTCTATTTACGGTGCCAAATTTCAGGATGAGAATTTCAATTTGAAGCATACTGGCCCTGGAATTCTCTCCATGGCAAATGCTGGACCTCATACAAATGGTTCTCAGTTCTTTATATGTACTACAAAGACACCCTGGCTTGATGGAAAACATGTAGTGTTTGGAAAAGTTGTTGATGGGTACAATGTTGTGAAGGAGATGGAGAAGGTGGGTTCTGGAAGTGGCAGAACATTAGAACCTGTAGTAATAGATGACTGTGGGCAGTTAGAGAAATGA 618 0.4175 MPLLRLLHCSVPISTSSSLPKDLRNSVVVINMSKNPKVFFDILIGKMKAGRVVMELYADATPKTAENFRALCTGEKGIGQSGKPLHYKGSTFHRIIPDFMCQGGDFTRGNGTGGESIYGAKFQDENFNLKHTGPGILSMANAGPHTNGSQFFICTTKTPWLDGKHVVFGKVVDGYNVVKEMEKVGSGSGRTLEPVVIDDCGQLEK 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03084 205 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 87 104 IPR020892 GO:0003755|GO:0006457
Cca03g03084 205 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 33 203 - -
Cca03g03084 205 PIRSF Peptidylpro_ismrse 24 205 IPR024936 GO:0003755
Cca03g03084 205 SUPERFAMILY Cyclophilin-like 28 203 IPR029000 -
Cca03g03084 205 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 33 203 - -
Cca03g03084 205 CDD cyclophilin_ABH_like 36 201 - -
Cca03g03084 205 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 39 202 IPR002130 GO:0000413|GO:0003755
Cca03g03084 205 Gene3D - 26 205 IPR029000 -
Cca03g03084 205 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 56 71 IPR002130 GO:0000413|GO:0003755
Cca03g03084 205 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 104 IPR002130 GO:0000413|GO:0003755
Cca03g03084 205 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Cca03g03084 205 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 150 162 IPR002130 GO:0000413|GO:0003755
Cca03g03084 205 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 163 178 IPR002130 GO:0000413|GO:0003755
Cca03g03084 205 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 46 201 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03084 Cca-Chr3 52314798 52316466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03084 15 197 U-box Gene Family AT5G67530 43.915 2.43e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03084 K01802 - gmx:100306275 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03084 03 52314798 52316466 Cca03g03084 03 52314798 52316466 ECH