Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g03083 | ATGACTTCTTATTCTTCCCTCCCTTTCAACCAAAATGATTCCCAACAAATGCTCCTTTACCACCCTCAGCCTCAGGCTTCCTACAGAGGGGTCCGAAGGAGGCCGTGGGGGAAGTACGCCGCCGAGATAAGGGACTCCACCAGGAACGGAGTCAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGAAGCTGCTTTGGCCTACGACCAGGCTGCGCTGGCCATGCGAGGCTCCATGGCTGTCTTGAATTTTTCTGCTGAGACCGTTCGCCAGTCTCTTCGGAACATCGACTGTGCTTCTTTCCAACAAGGCTCCTCTCCCGTTCTCGAGTTGAAGAAGAGACATGCCATCAACAGAAAAACCCTAAAAAACAAGAACCTCAAACATCTCAATAATCTCATAGTGTTGGAGGACTTGGGGACTGACTATTTAGAACAACTTCTTACTCTCTCCTCCCAGGATATGGATATGGATATGAATGCTTCTTAG | 489 | 0.499 | MTSYSSLPFNQNDSQQMLLYHPQPQASYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEEAALAYDQAALAMRGSMAVLNFSAETVRQSLRNIDCASFQQGSSPVLELKKRHAINRKTLKNKNLKHLNNLIVLEDLGTDYLEQLLTLSSQDMDMDMNAS | 162 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g03083 | 162 | Pfam | AP2 domain | 28 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03083 | 162 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 24 | 152 | - | - | |
Cca03g03083 | 162 | Gene3D | AP2/ERF domain | 27 | 86 | IPR036955 | GO:0003700|GO:0006355 | |
Cca03g03083 | 162 | PRINTS | Ethylene responsive element binding protein signature | 28 | 39 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03083 | 162 | PRINTS | Ethylene responsive element binding protein signature | 51 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03083 | 162 | SUPERFAMILY | DNA-binding domain | 28 | 86 | IPR016177 | GO:0003677 | |
Cca03g03083 | 162 | SMART | rav1_2 | 27 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03083 | 162 | ProSiteProfiles | AP2/ERF domain profile. | 27 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03083 | 162 | CDD | AP2 | 28 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03083 | 162 | PANTHER | DNA-BINDING DOMAIN | 24 | 152 | IPR044808 | GO:0003700|GO:0009873 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g03083 | Cca-Chr3 | 52307826 | 52308362 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g03083 | 7 | 148 | AP2-EREBP Transcription Factor Family | AT3G23240 | 51.429 | 1.64e-57 | 177 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Cca03g03083 | AP2 | 2e-16 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g03083 | K14516 | - | gmx:100787732 | 199.904 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g03083 | 03 | 52307826 | 52308362 | Cca02g01608 | 02 | 34849302 | 34849790 | ECH | |
Cca02g01023 | 02 | 26954291 | 26954926 | Cca03g03083 | 03 | 52307826 | 52308362 | ECH | |
Cca03g02200 | 03 | 42730758 | 42731399 | Cca03g03083 | 03 | 52307826 | 52308362 | ECH | |
Cca03g03083 | 03 | 52307826 | 52308362 | Cca03g03083 | 03 | 52307826 | 52308362 | ECH | |
Cca03g03083 | 03 | 52307826 | 52308362 | Cca02g01024 | 02 | 26978087 | 26978695 | PCT |