Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03083 ATGACTTCTTATTCTTCCCTCCCTTTCAACCAAAATGATTCCCAACAAATGCTCCTTTACCACCCTCAGCCTCAGGCTTCCTACAGAGGGGTCCGAAGGAGGCCGTGGGGGAAGTACGCCGCCGAGATAAGGGACTCCACCAGGAACGGAGTCAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGAAGCTGCTTTGGCCTACGACCAGGCTGCGCTGGCCATGCGAGGCTCCATGGCTGTCTTGAATTTTTCTGCTGAGACCGTTCGCCAGTCTCTTCGGAACATCGACTGTGCTTCTTTCCAACAAGGCTCCTCTCCCGTTCTCGAGTTGAAGAAGAGACATGCCATCAACAGAAAAACCCTAAAAAACAAGAACCTCAAACATCTCAATAATCTCATAGTGTTGGAGGACTTGGGGACTGACTATTTAGAACAACTTCTTACTCTCTCCTCCCAGGATATGGATATGGATATGAATGCTTCTTAG 489 0.499 MTSYSSLPFNQNDSQQMLLYHPQPQASYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEEAALAYDQAALAMRGSMAVLNFSAETVRQSLRNIDCASFQQGSSPVLELKKRHAINRKTLKNKNLKHLNNLIVLEDLGTDYLEQLLTLSSQDMDMDMNAS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03083 162 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Cca03g03083 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 24 152 - -
Cca03g03083 162 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Cca03g03083 162 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Cca03g03083 162 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Cca03g03083 162 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Cca03g03083 162 SMART rav1_2 27 91 IPR001471 GO:0003700|GO:0006355
Cca03g03083 162 ProSiteProfiles AP2/ERF domain profile. 27 85 IPR001471 GO:0003700|GO:0006355
Cca03g03083 162 CDD AP2 28 84 IPR001471 GO:0003700|GO:0006355
Cca03g03083 162 PANTHER DNA-BINDING DOMAIN 24 152 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03083 Cca-Chr3 52307826 52308362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03083 7 148 AP2-EREBP Transcription Factor Family AT3G23240 51.429 1.64e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca03g03083 AP2 2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03083 K14516 - gmx:100787732 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03083 03 52307826 52308362 Cca02g01608 02 34849302 34849790 ECH
Cca02g01023 02 26954291 26954926 Cca03g03083 03 52307826 52308362 ECH
Cca03g02200 03 42730758 42731399 Cca03g03083 03 52307826 52308362 ECH
Cca03g03083 03 52307826 52308362 Cca03g03083 03 52307826 52308362 ECH
Cca03g03083 03 52307826 52308362 Cca02g01024 02 26978087 26978695 PCT