Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03081 ATGTGGTCAGAAGAAACACCTTCCCTCAACAACCAACAATACCAACTCCTCCAAGAACTCGGCCGTGGCCGTTTCGGCACCGTCTTCCGCTGCCTCCACCGCGCCTCCAACCGCCTCCACGCCGCCAAGCTCATCCACAAACGCCACCTCACCGACTCCACCGACCGCCGCTGCCTCCAAGTTGAACCCAAAGCCATGACCTTCCTCTCTCCGCACCCCAACATTCTCCAAATCATCGACACCTTCGAAGACGCCGACACCACCACCCTCGTCCTCGAGCTCTGCCAGCGCCGCACCCTCTTCGACCGCCTCTCCGACGACGGCGCCCTCCCGGAGCCCCACGCCGCCTCCCTCGCCAAGCAGCTCCTCGAGGCCCTGGCCCACTGCCACGCGTTGGGCCTGGCCCACAGGGACATAAAGCCCGACAACCTCCTTTTCGACGACGCCAACAACCTCAAACTCTCGGACTTCGGGTCCGCGGAGTGGTTCGGTGAGGGCGTGACCATGAGCGGTGTGGTGGGCACGCCCTATTACGTGGCACCCGAAGTGATCATGGGGAGAGAGTACGATGAGAAAGTGGATGTTTGGAGCAGTGGGGTTATTGTTTACACCATGTTGTCTGGGATTCCACCCTTTTATGGAGAGTCTGTGAGTGAGATTTTTGAGGCTGTTTTAAGGGCCAATCTTAGGTTTCCCACCACAATTTTTAGGACTGTCTCTGCCCCTGCTAAGGACCTCCTTAGGAAGATGATTTGTAGGGATCCCTCTAGGCGCATTTCCGCGCAACAGGCATTGAGACACCCGTGGATTGTGAGTGGGGGTGTGACGAGTGGTCATCTATCTTGA 846 0.5827 MWSEETPSLNNQQYQLLQELGRGRFGTVFRCLHRASNRLHAAKLIHKRHLTDSTDRRCLQVEPKAMTFLSPHPNILQIIDTFEDADTTTLVLELCQRRTLFDRLSDDGALPEPHAASLAKQLLEALAHCHALGLAHRDIKPDNLLFDDANNLKLSDFGSAEWFGEGVTMSGVVGTPYYVAPEVIMGREYDEKVDVWSSGVIVYTMLSGIPPFYGESVSEIFEAVLRANLRFPTTIFRTVSAPAKDLLRKMICRDPSRRISAQQALRHPWIVSGGVTSGHLS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03081 281 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 276 - -
Cca03g03081 281 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 9 276 - -
Cca03g03081 281 CDD STKc_CAMK 13 269 - -
Cca03g03081 281 Pfam Protein kinase domain 14 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03081 281 SUPERFAMILY Protein kinase-like (PK-like) 12 272 IPR011009 -
Cca03g03081 281 ProSiteProfiles Protein kinase domain profile. 14 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03081 281 SMART serkin_6 14 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03081 281 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Cca03g03081 281 Gene3D Transferase(Phosphotransferase) domain 1 7 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03081 Cca-Chr3 52287960 52289194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03081 5 271 EF-hand Containing Proteins AT4G09570 44.074 1.37e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca03g03081 Pkinase 6.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03081 - K08794 gmx:547573 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03081 03 52287960 52289194 Cca02g01605 02 34810298 34811748 ECH
Cca03g03081 03 52287960 52289194 Cca03g03081 03 52287960 52289194 ECH