Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03074 ATGAGGACTCCATGTTGTGAGAGGATGGGATTGAAGAAGGGACCTTGGACTGCTGAAGAAGATCACATATTGGTTTCCCATATTCAACGTTATGGCCATGGAAACTGGCGTGCGCTTCCTAAACAAGCTGGCTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACTTGAGGCCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGATACCATCCTAAAGCTACATCAAATTCTTGGAAATAGATGGTCTGCTATAGCGGCAAGCTTACCCGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGATCGAGAAAAGTGGAGTACTGCACAATGGAAATGCTTATGCTTCCTCACATATGATCTTGCAAGAGGCACAAGATGCATCAAGTACTTCTTCTAGTGTCACTGGAAATATGATGATTGCCAATTACGGTTTAGCCTCAAGGAAGAATCCACCTTTTGTCGGTACAGGATTTTACGGTGCAGTCTCATCAAATACTTTTATGGGAAATCATGATTCTTGTCAGCTCAGTGAAGAAATGGAATTCTGGTACAATATATTCATCAAATCAGGGCAAACATCATGA 624 0.4119 MRTPCCERMGLKKGPWTAEEDHILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILKLHQILGNRWSAIAASLPGRTDNEIKNFWHTHLKKRIEKSGVLHNGNAYASSHMILQEAQDASSTSSSVTGNMMIANYGLASRKNPPFVGTGFYGAVSSNTFMGNHDSCQLSEEMEFWYNIFIKSGQTS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03074 207 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Cca03g03074 207 SMART sant 65 113 IPR001005 -
Cca03g03074 207 SMART sant 12 62 IPR001005 -
Cca03g03074 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Cca03g03074 207 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Cca03g03074 207 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Cca03g03074 207 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Cca03g03074 207 CDD SANT 68 111 IPR001005 -
Cca03g03074 207 CDD SANT 15 60 IPR001005 -
Cca03g03074 207 PANTHER MYB TRANSCRIPTION FACTOR 2 205 - -
Cca03g03074 207 SUPERFAMILY Homeodomain-like 9 107 IPR009057 -
Cca03g03074 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Cca03g03074 207 Gene3D - 68 115 - -
Cca03g03074 207 Gene3D - 12 65 - -
Cca03g03074 207 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03074 Cca-Chr3 52170969 52172117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03074 2 124 MYB Transcription Factor Family AT2G31180 75.610 5.68e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g03074 Myb_DNA-binding 3.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03074 K09422 - gmx:102663040 343.199