Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03069 ATGTCTTCATCTTCTCGTGTTCTTTCCACTCCCCTAGAAAACAAGTATATGAAACCCCCAGATTCTTTTCAGCTTTCACCCGTTAAAGATCTGACTGCAAATTCTTCCTCATCAAATTCAAACAGAACTGCTGGGAAGATGCTTTCATCACCTTCTGAATGTCCCAATGACAACCCTTTTTCCTCTGTTTCACAGCATGAGAGACAATACCAAGATCCCCCCTTTGTTTCTCAAACAATGACTGACAATGTGTCATCCGAAATACATCCAACTACATTCATTTCTCACCCTCAAGAAAGTGAAGATATTTCCTGGGGACCAGATCCATTTCAGGATATTCTTGGTTTTCCTGAAAATGTTTCTGTCCAGCATGATCAGGTGGAAGACAGTGCTGGTTACTTAAATGATGACAATGTCAAAAAAACTGATTTTGGGGAGTGGGTGGATCAGTTAATGTCAATTGATGATTCTCTTCACCCAAACTGGAGTCAGCTTCTTTGTGATGACAATGTAGCAGAACCAAAACCAAAGGCATCTCAGGTTCCTCAGCAGCAGCATATTCCATCTGTAGAAGTTCTTTGTAATgcagcagcagcagcaactgcatcgcagACTAAGCCTAGAATGCGTTGGACTCCAGAGCTTCATGAGGCCTTCGTGGAAGCAGTCAATCAACTTGGCGGTAGTGAGAAGGCTACTCCGAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACCATCTATCATGTAAAAAGCCACTTACAGAAGTATAGAACTGCCAGATACAAACCAGAGTCGTCAGAAGCAGGAACGTCTGAGAAAAAGGCGACTCCAATTGAAGAAATGAAATCTCTAGATTTGAAAACGAGTAAGGGGATCACTGAAGCATTACGATTGCAGATGGAACTCCAGAAGCGACTTCACGAACAACTCGAAATCCAAAGAAAGTTACAGATTCAAATTGAAGACCAAGGGAAACGTCTTCAAATGATGTTTGAGAAACAGAGAGAGATGGGTGACGGCAATGGTAAGGGTTCATCCTCCTCTCCTTTGGACGAGCCTTCGGGTGCAGTTCCAGACACAGTGATTCCAGTAGAAACCTCAAATGAGGAAGGTGACAAATTTGGAAGCATTCCGAAAGAAGGGGATGCAAGGGCAGATGAAGATGAAGCTGCACCCCCCACAAAACGGGCCAAAAGTTCATGA 1209 0.421 MSSSSRVLSTPLENKYMKPPDSFQLSPVKDLTANSSSSNSNRTAGKMLSSPSECPNDNPFSSVSQHERQYQDPPFVSQTMTDNVSSEIHPTTFISHPQESEDISWGPDPFQDILGFPENVSVQHDQVEDSAGYLNDDNVKKTDFGEWVDQLMSIDDSLHPNWSQLLCDDNVAEPKPKASQVPQQQHIPSVEVLCNAAAAATASQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEAGTSEKKATPIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGDGNGKGSSSSPLDEPSGAVPDTVIPVETSNEEGDKFGSIPKEGDARADEDEAAPPTKRAKSS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03069 402 Coils Coil 295 315 - -
Cca03g03069 402 SUPERFAMILY Homeodomain-like 204 260 IPR009057 -
Cca03g03069 402 MobiDBLite consensus disorder prediction 374 402 - -
Cca03g03069 402 MobiDBLite consensus disorder prediction 1 80 - -
Cca03g03069 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 260 IPR006447 GO:0003677
Cca03g03069 402 MobiDBLite consensus disorder prediction 27 80 - -
Cca03g03069 402 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Cca03g03069 402 Pfam MYB-CC type transfactor, LHEQLE motif 294 338 IPR025756 -
Cca03g03069 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 382 IPR044848 GO:0003700
Cca03g03069 402 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 382 - -
Cca03g03069 402 Gene3D - 205 264 - -
Cca03g03069 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Cca03g03069 402 MobiDBLite consensus disorder prediction 338 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03069 Cca-Chr3 52125337 52130321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03069 87 365 G2-like Transcription Factor Family AT3G04450 49.495 3.33e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca03g03069 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03069 - - gmx:100803267 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03069 03 52125337 52130321 Cca03g03069 03 52125337 52130321 ECH
Cca03g03069 03 52125337 52130321 Cca02g00982 02 26064259 26073755 PCT