Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03067 ATGGCCCCTAATCCAAGAGTTAGTAAGGCCTTTAACTTTATGAAGGCCTTAGGAATTTCTAGTGTGAAGGTAAAGCCAGTGTTGATAAAGCTGTTAAAAGTTTATGAAGGAAACTGGGAACTTATTGAAGATGACAATTATCGGACACTTGTAGATGCATACTTCGATGTTGAGAAAGAAAAGGTAGCTGAAAGTGAGAAAAAAGGTAATGACAGTTGTTATGGTGGAGAGAAACCAATTCAGGAACCTATCCTGATAGATGATGATGACAAGGATTTATCAAGTCAAATGTTACGTGAAGAAGATAATAAAATATCACCAAAGTCTTTTGAGCAGAATAGCATTGAGCCATCTCAAACGTTCATGGAAGATATTATGGCCAAAACCAGTTCACAAGCATCACATACAAGTACGTCGAGTGAGGTAGAAAAGATTTCAACTTTACCTCACGTGGCAGCTAAAGATAGAAAATCATATCCTCACGAGAAAGCATCGTCTGCTGGGCATTCTGGTCATTTCGAGAAAGAGATTGTGAAGCCAAGAAATAAGAAACCCAAGTTACAACTTACTTCGACGAATCGTAAAGGAAGTCATTTTGTTAAACCTTTGTCAATTCAGGATCAGGATTTTCAAAGTAAACATGATATATCAGCATGCAACAATGATACTACCGCTTATAATGGAAACATTAAGATTGGTTCTTCGAGTCTGGGAGAAGTAAAAATACTTTTAGATTGTGACTCTGCCTTGGGACAACCAAACTTTAGTATTCCTAATTTGGATTTTGTAATGAAGTTCATGGACAGGAAGTACCTCAGCTCTTGCAACACTGTTGGATCCCATTTTTCTATGCCAAAGCTATTAGATGATTTTTGCAGTAGTTATCTCAAGTTGGGACATCGAAAGGGATCAAATTCCAAACATGGCAATTCACAGCAATGTGATAATCAAGGTGAAAGGAATTCCAGTCATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATTGGTGAAATTGGCAAGGAGGACTTGCCAAAGTTTAATTACATACCATATAATATAATATATCAAAGTGCTATTGTAAGCATTTCTTTGGCTAGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCAACTGTCTTTCCGCATCATTGCCTTGTATATGTGCTCAGGAAACTGGTGGAGAGTTTGCTTACACTCCGCAAGGTTTGTTGAAACAAGAATTTCTAACAGCTTGTATGTCTATGAAGAATGAACCTCAAGATCATCATTATGTGTACTGTCAAGAGTGCCCTTTGGAGAAGTCCAAGAATGAGTACATGCCTGAACGCTGCAAGGGGCATATGGTTAGGAAATTTATTAAGGAATGCTGGAGGAAATGTGGATGTGACATGCAATGCGGAAATCGATTAGTGCAACGAGGTATAACATGCAAATTGCAGGTGTTCTTAACTCGTGAAGGTAAAGGCTGGGGCCTTAGAACGTTAGAAGATTTACCAAAGGGAACTTTCGTATGTGAATATGTTGGAGAAATATTAACCAATATGGAGTTATACGATAGGATTATGGGGAATGTTGGCAAAGAAAGACATACATATCCTGTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTAAAGGATGAAGAGGCACTATGTTTAGATGCAACAATTAATGGTAACGTTGGAAGGTTCATCAATCATAGATGCCATGATGCAAATCTCATAGACATTCCTGTTGAAATAGAGAGTCCAGATCATCATTATTACCACCTTGCGTTCTTTACCAACAGGAAAGTGAGTGCATATGAGGAGTTGACATGGGATTATGGTATTGATTTTGATGACCACGATCATCCTATTAAAGCATTTCGGTGTTCTTGTGGAAGCGTTTTCTGCTGTGATAAGAAACAAAAAGGAAAAGGAAAAATTTAA 1956 0.3799 MAPNPRVSKAFNFMKALGISSVKVKPVLIKLLKVYEGNWELIEDDNYRTLVDAYFDVEKEKVAESEKKGNDSCYGGEKPIQEPILIDDDDKDLSSQMLREEDNKISPKSFEQNSIEPSQTFMEDIMAKTSSQASHTSTSSEVEKISTLPHVAAKDRKSYPHEKASSAGHSGHFEKEIVKPRNKKPKLQLTSTNRKGSHFVKPLSIQDQDFQSKHDISACNNDTTAYNGNIKIGSSSLGEVKILLDCDSALGQPNFSIPNLDFVMKFMDRKYLSSCNTVGSHFSMPKLLDDFCSSYLKLGHRKGSNSKHGNSQQCDNQGERNSSHFISDITKGSEKVKISLIGEIGKEDLPKFNYIPYNIIYQSAIVSISLARISDEGCCSDCSGNCLSASLPCICAQETGGEFAYTPQGLLKQEFLTACMSMKNEPQDHHYVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCDMQCGNRLVQRGITCKLQVFLTREGKGWGLRTLEDLPKGTFVCEYVGEILTNMELYDRIMGNVGKERHTYPVTLDADWGSEKGLKDEEALCLDATINGNVGRFINHRCHDANLIDIPVEIESPDHHYYHLAFFTNRKVSAYEELTWDYGIDFDDHDHPIKAFRCSCGSVFCCDKKQKGKGKI 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03067 651 MobiDBLite consensus disorder prediction 148 176 - -
Cca03g03067 651 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
Cca03g03067 651 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 650 - -
Cca03g03067 651 MobiDBLite consensus disorder prediction 127 145 - -
Cca03g03067 651 SMART preset_2 326 468 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca03g03067 651 MobiDBLite consensus disorder prediction 301 322 - -
Cca03g03067 651 CDD SET_SETDB-like 350 618 - -
Cca03g03067 651 SUPERFAMILY SET domain 336 640 IPR046341 -
Cca03g03067 651 Pfam Pre-SET motif 329 476 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca03g03067 651 Gene3D SET domain 304 628 IPR046341 -
Cca03g03067 651 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 651 IPR025776 -
Cca03g03067 651 ProSiteProfiles SET domain profile. 484 618 IPR001214 GO:0005515
Cca03g03067 651 Gene3D - 1 60 IPR043017 -
Cca03g03067 651 ProSiteProfiles Pre-SET domain profile. 382 481 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca03g03067 651 MobiDBLite consensus disorder prediction 305 322 - -
Cca03g03067 651 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 650 - -
Cca03g03067 651 Pfam SET domain 496 618 IPR001214 GO:0005515
Cca03g03067 651 MobiDBLite consensus disorder prediction 127 176 - -
Cca03g03067 651 SMART set_7 484 624 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03067 Cca-Chr3 52103524 52116349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03067 325 640 Su(var)3-9 homologs AT5G04940 28.228 1.75e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca03g03067 Pre-SET 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03067 - - vun:114188074 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03067 03 52103524 52116349 Cca02g00977 02 25983747 25990919 PCT