Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03061 ATGGGGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGCTTGAAGATCCACAAGTATGTTGGATTGATGGACAGGTAACAAAAATCAATGGGAAGGACGCTGAAATTGAAGCAGGCAATAGAAAGAAGGTTGTCGCAAAGTTATCAAAAATATATCCCAAAGATACGGAAGCTCCTGCAGGTGGAGTGGATGATATGACTAAGCTTTCCTATTTGCATGAGCCTGGAGTCCTGCAAAACTTAAAAACAAGATATGAATTGAATGAAATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAGACTACCTCATATTTATGATTTGCACATGATGCAACAATACAAGGGAGCACCATTTGGAGAGTTAAGCCCTCATATATTTGCAGTTGCTGATGTTGCATATAGGGCAATGATTAATGAAGGAAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCGATACCTTGCTTTCTTAGGTGGTAGGGCTGCCACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGAAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCCATTCGAACATACCTTTTAGAGAGATCCCGGGTTTGCCAGATTAATGATCCTGAGCGCAACTACCACTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGAAGTCCTAAAACGTTTCATTACCTTAACCAGTCAAAATGCTATGAACTCGATGATATGAATGATTCCCTTGAGTATCTTGCTACCAGGAGAGCAATGGATATTGTCGGAATAAGCCAACAAGAGCAGGAGGCAATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGGAATATTGATTTTGCCAAAGGAAAGGAAGTTGATTCATCGATTCCAAAAGATGACAAAGCCAAATTCCACTTAAAAACAACTGCTGAGCTCCTTATGTGCGATACTGATGGCTTGGAAGATGCTTTGTGTAAGCGTGTCATGGTCACCCCTGAGGAAGTTATAAAACGAAGCCTTGATCCCCAAAGTGCAGCAGTCAGCAGAGATGGCCTGGCAAAAACAATTTATTCTAGGCTCTTTGACTGGTTGGTGAACAAGATTAATAATTCAATCGGACAAGACTCCAATTCTAAATCTTTGATCGGGGTGCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTCTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTGTTTAAGATGGAACAAGAAGAATACACGAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATCATTGCACTCCTTGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTTCTAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAACTGTCCCGAACAAATTTCACCATTTCTCATTATGCTGGCGAGGTGCAGTACCAGTCTGACCAATTTTTAGACAAAAACAAGGACTATGTGGTTGCTGAACATCAAGATTTATTGAGTGCTTCCAAATGTTCTTTTGTAGCAGGTCTTTTTCCTCCACTTCCAGAAGAGACGTCCAAATCTTCAAAATTTTCTTCAATTGGCTCTCGATTTAAGCTGCAACTACAGCAACTAATGGAAACACTAAGCTCTACAGAGCCTCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATGCCAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGTCGTGCTTTCTTTGAATTTGTAAACCGATTTTCCCTTCTTGCCCCAGAGGTCACAGAAGCACAACATGATGAGAAGATCGTTTGCCAAAAGATTCTAGAAAAAGTGAGGCTTAAAGGATATCAGATTGGAAAAACAAAGGTTTTCCTAAGAGCAGGTCAGATGGCTGAACTAGATGCCCAGAGAGCTCAAGTACTCGGTCATGCAGCAAAAACTATCCAACAGCGTATACGAACCCATCAAGCTCGTAAACATTATCTTGCGCTACGAAAGAAGACGACATATGTGCAGTCTCTATGGAGAGGAAGACTTGCATTAAAACTTTATCAGAAAATGAGAAGGGAGGCTGCTGCTGTGAAAATTCAGAAGAACATACGCAGATATGATGCTAGGAAAAGCTATATCAAACTCCACGCATCAGTACTTACTTTGCAAACAGCTTTAAGGGCAATTGCTGCGCATAAGGAATTCAGTTTTAGGAAACAGACGAAGGCTTCCATCATTATTCAGGCTCGGTGGCGGTGCCACAAAGCTGCGTCATATTATAAGAAGCTCAAGAAAGGTGCAATTGTCACACAATGCCGATGGAGGGGGAATGTGGCCAGGAAAGAACTTAGGAAATTGAAAATGGCTGCAAGAGAAACTGGCGCACTTAAAGAAGCAAAGGACAAGCTTGAAAAAAGAGTGGAGGAACTCACTTGGCGTCTTCAACTAGAGAAAAGTTTAAGGGCCAACCTAGAAGAATCCAAAACACAAGAGATAGCAAAACTGCAGAATTCACTGCAGGAAATGCAGAACAAAGTTGATGAAACCAATGCAATGCTTGTAAAAGAGCGAGAGAATGTGAAAGTTATTGAAGAAGCACCTCCTGTTGTTAAAGAAATTGAGGTTATTGTTGAAGACACTCAGAAGATTGAATCACTAACAGCTGAAGTTGAGAGTCTGCAGACATCCCTTGAGTCAGAGAAACAGAAAGCTGACGCATTTGAAAGTAAATATAATGAAGCCCAAGCTTGTAGTGAAGAAAGCAGTAAAAAATTAGAAGACTCGGAGAAGAAGGTTTGTCAGCTCCAAGAAATCTTGACCAGGCTAGAAGAAAAGATTACTAATATAGAATCAGAGAATCAAGTTCTACGCCAACAAGCCCTGGCCATGACACCTAATAAGTTCCCCTCAGTACGCACCAGGTCAATTATTCAGAGAGTGGACAGTGGACATATTGGAGTGGAAGCAAGGACAACTTTGGATATACATAGCTCATCAATGAACCACAGGGAATCCTCTGAAGTGGAGGATAAACCACAGAAGTCACTAAATGAGAAACAACAGGAGAACCAAGAGTTACTCATTAGATGCATTGCACAACACCTAGGCTTTGCTGGGAATAGACCAGTTGCTGCTTGTATCGTATACAAATGCCTCTTGCATTGGAGATCATTTGAAGTTGAACGTACAAGTGTTTTTGATCGTATAATCCAGATTGTTGGTCATGCAATTGAGACCCAGGATAACAATGATGTCTTGGCTTATTGGTTATGCAACACCTCTACACTTGTCTTGTTACTCCAGCGCACACTTAAGGCAAGTGGTGCTGCTGGAATGGCTCCTCAGCGCCGTCGTTCTTCATCAGGGACCCTATTTGGGAGGATGACTCAAAGTTTCCGTGGAGCTCCACCGGGAGTCAATGTTTCACTAATCAGTGGTAGCGTAAGCGGTGGTGTAGATACATTAAGACACGTTGAAGCCAAGTACCCAGCTCTCCTTTTCAAACAGCAGCTTACGGCTTATGTGGAAAAGATATATGGAATGATTCGAGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCGCCCAGAACATCCAGAGCGAGCTTGGTTAAGGGATCATCACGTTCAGTTGCAAACACTGAATCCCAGAAAGCTTTGATTGCTCACTGGCAAGGGATAGTTAAGAGCCTTGGGAACTTCTTAAATACATTGAAAGAAAATCATGTTCCCCCATTTTTGGTTCGTAAGGTGTTCACCCAAATGTTTTCTTTCATCAATGTCCAACTTTTCAATAGTCTTCTTCTAAGACGGGAGTGCTGCTCATTTAGTAATGGAGAATTTGTGAAAGCTGGTTTGGCTGAATTGGAGGATTGGTGTTATAAGGCCACAGATGAGTACGCTGGTTCAGCTTGGGATGAGCTCAAACATATAAGACAGGCTATTGGATTTTTGGTCATACATCAGAAACCAAAGAAAACGCTGGATGAAATAAGTCATGACCTGTGCCCAGTCCTCAGTATACAGCAGCTATATCGGATTAGCACCATGTACTGGGATGACAAGTATGGCACACATAGCGTATCCCCTGATGTCATATCCAATATGAGAGTGATGATGACCGAAGATTCAAATAGTGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACATATCGAAGTCGAAGGAACAGATAGATATCTCTGATGTAGACCCCCCACCACTAATACGTGAAAACTCTGGCTTTAGTTTCTTGTTGCCACGCCCAGACTGA 4587 0.4094 MGTPVNIIVGSHVWLEDPQVCWIDGQVTKINGKDAEIEAGNRKKVVAKLSKIYPKDTEAPAGGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDLHMMQQYKGAPFGELSPHIFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGSPKTFHYLNQSKCYELDDMNDSLEYLATRRAMDIVGISQQEQEAIFRVVAAILHIGNIDFAKGKEVDSSIPKDDKAKFHLKTTAELLMCDTDGLEDALCKRVMVTPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVNKINNSIGQDSNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSNKLYQTFKNHKRFIKPKLSRTNFTISHYAGEVQYQSDQFLDKNKDYVVAEHQDLLSASKCSFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMETLSSTEPHYIRCVKPNNLLKPAIFENANIMQQLRCGGVLEAIRISCAGYPTRRAFFEFVNRFSLLAPEVTEAQHDEKIVCQKILEKVRLKGYQIGKTKVFLRAGQMAELDAQRAQVLGHAAKTIQQRIRTHQARKHYLALRKKTTYVQSLWRGRLALKLYQKMRREAAAVKIQKNIRRYDARKSYIKLHASVLTLQTALRAIAAHKEFSFRKQTKASIIIQARWRCHKAASYYKKLKKGAIVTQCRWRGNVARKELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRANLEESKTQEIAKLQNSLQEMQNKVDETNAMLVKERENVKVIEEAPPVVKEIEVIVEDTQKIESLTAEVESLQTSLESEKQKADAFESKYNEAQACSEESSKKLEDSEKKVCQLQEILTRLEEKITNIESENQVLRQQALAMTPNKFPSVRTRSIIQRVDSGHIGVEARTTLDIHSSSMNHRESSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPVAACIVYKCLLHWRSFEVERTSVFDRIIQIVGHAIETQDNNDVLAYWLCNTSTLVLLLQRTLKASGAAGMAPQRRRSSSGTLFGRMTQSFRGAPPGVNVSLISGSVSGGVDTLRHVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTESQKALIAHWQGIVKSLGNFLNTLKENHVPPFLVRKVFTQMFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEDWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVMMTEDSNSAVSNSFLLDDDSSIPFSVDDISKSKEQIDISDVDPPPLIRENSGFSFLLPRPD 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03061 1528 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Cca03g03061 1528 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g03061 1528 Coils Coil 916 950 - -
Cca03g03061 1528 PANTHER MYOSIN 6 1525 - -
Cca03g03061 1528 CDD MYSc_Myo11 76 720 IPR036018 -
Cca03g03061 1528 Coils Coil 1030 1050 - -
Cca03g03061 1528 Gene3D - 833 882 - -
Cca03g03061 1528 Gene3D - 786 832 - -
Cca03g03061 1528 Gene3D - 735 785 - -
Cca03g03061 1528 Gene3D - 439 623 - -
Cca03g03061 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
Cca03g03061 1528 Gene3D Kinesin motor domain 65 662 IPR036961 -
Cca03g03061 1528 ProSiteProfiles Dilute domain profile. 1158 1471 IPR002710 -
Cca03g03061 1528 Pfam DIL domain 1347 1450 IPR002710 -
Cca03g03061 1528 Gene3D - 252 310 - -
Cca03g03061 1528 Coils Coil 967 1008 - -
Cca03g03061 1528 PANTHER MYOSIN-9 6 1525 - -
Cca03g03061 1528 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Cca03g03061 1528 Gene3D - 667 733 - -
Cca03g03061 1528 SMART DIL_2 1346 1453 IPR002710 -
Cca03g03061 1528 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cca03g03061 1528 Coils Coil 877 911 - -
Cca03g03061 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 785 IPR027417 -
Cca03g03061 1528 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g03061 1528 ProSiteProfiles IQ motif profile. 737 763 IPR000048 GO:0005515
Cca03g03061 1528 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g03061 1528 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca03g03061 1528 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Cca03g03061 1528 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Cca03g03061 1528 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Cca03g03061 1528 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Cca03g03061 1528 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g03061 1528 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g03061 1528 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g03061 1528 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g03061 1528 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g03061 1528 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca03g03061 1528 CDD MyosinXI_CBD 1109 1494 IPR037975 GO:0007015
Cca03g03061 1528 ProSiteProfiles IQ motif profile. 831 857 IPR000048 GO:0005515
Cca03g03061 1528 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Cca03g03061 1528 MobiDBLite consensus disorder prediction 1085 1109 - -
Cca03g03061 1528 SMART iq_5 757 779 IPR000048 GO:0005515
Cca03g03061 1528 SMART iq_5 853 875 IPR000048 GO:0005515
Cca03g03061 1528 SMART iq_5 830 852 IPR000048 GO:0005515
Cca03g03061 1528 SMART iq_5 782 804 IPR000048 GO:0005515
Cca03g03061 1528 SMART iq_5 734 756 IPR000048 GO:0005515
Cca03g03061 1528 MobiDBLite consensus disorder prediction 1091 1109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03061 Cca-Chr3 52048398 52066818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03061 1 1528 Myosins gene family AT1G54560 81.634 0.0 2636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03061 K10357 - gmx:100816792 2667.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03061 03 52048398 52066818 Cca03g03061 03 52048398 52066818 ECH
Cca03g03061 03 52048398 52066818 Cca02g00953 02 25625055 25644076 PCT