Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03044 ATGACGGAGGCAGAGAGAGAAAAGTACAGCATGATCAACTTTGAAGAGACCGAGTTGCGACTCGGGCGGCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGTAGCAGTCCCCCCCCCCCCCCTGCCACTCAGTGGAGGCGAGGCCGAGTCCACGCTCAAAAACACTTGCGCTGTCTTTAACGGGAAGAGGGTCTTTTCGGAGACAAGCACCACTACCGTCGATTTGAAGCTTAACCTTTCATCAACCTCCAATACTGTCTCTGCTGACGTGGCCAAAGACAACGCAACTGCGGCTAACTCCACTGCACCACCTCCTTCTCCAGCTCGTGCCAACGACCCAGCAAAGCCACCCGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGGTCATTCAGAAAGAACATTGTGAGTAACGTTCAAAGGAGTAACAAGAAGGAGGAGGGTGAAAAAGGGGCGAGCACAAGTGGCAGCAACAACGGTGCAGCTTTCGTGAAAGTGAGCATGGATGGTGCTCCCTATCTACGCAAGGTGGATTTGAAGATGTACAAGAGCTACCAAGAGCTCTCGGATGCACTGGCTAAAATGTTCAGTTCCTTCACCACCATTGACAAATGTGGATCCCAAGGCATGAAGGACTTCATGAATGAGACCAAATTGATTGATCTTCTCAACGGCTCTGATTATGTCCCAACTTATGAAGACAAAGACGGAGACTGGATGCTCGTCGGTGACGTACCCTGGGAAATGTTCGTCGAATCATGCAAGCGCCTGCGCATAATGAAAGGATCTGAGGCTATCGGGCTAGCACCAAGAGCCGTGGAAAAGTGCAAGAGCAGAAGTTGA 900 0.47 MTEAEREKYSMINFEETELRLGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAVPPPPLPLSGGEAESTLKNTCAVFNGKRVFSETSTTTVDLKLNLSSTSNTVSADVAKDNATAANSTAPPPSPARANDPAKPPAKAQVVGWPPVRSFRKNIVSNVQRSNKKEEGEKGASTSGSNNGAAFVKVSMDGAPYLRKVDLKMYKSYQELSDALAKMFSSFTTIDKCGSQGMKDFMNETKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKSRS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03044 299 MobiDBLite consensus disorder prediction 153 178 - -
Cca03g03044 299 PANTHER AUXIN-INDUCED PROTEIN AUX28 74 292 - -
Cca03g03044 299 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 74 292 IPR003311 GO:0005634|GO:0006355
Cca03g03044 299 ProSiteProfiles PB1 domain profile. 180 281 IPR000270 GO:0005515
Cca03g03044 299 Coils Coil 52 52 - -
Cca03g03044 299 SUPERFAMILY CAD & PB1 domains 175 280 - -
Cca03g03044 299 MobiDBLite consensus disorder prediction 109 124 - -
Cca03g03044 299 MobiDBLite consensus disorder prediction 109 140 - -
Cca03g03044 299 Pfam AUX/IAA family 16 290 IPR033389 -
Cca03g03044 299 Gene3D - 175 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03044 Cca-Chr3 51877842 51879903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03044 152 289 B3 DNA Binding Superfamily AT4G23980 30.496 1.62e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca03g03044 AUX_IAA 2.8e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03044 K14484 - gmx:100796888 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01073 02 27730626 27734084 Cca03g03044 03 51877842 51879903 ECH
Cca03g03044 03 51877842 51879903 Cca03g03044 03 51877842 51879903 ECH