Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03039 ATGGACATCGTTGATTCCGATGACTACCAAGCTATTCTCAAGACCAAGCTTAATCTTGCATGTGCAGCCGTTGCTTTCACTCGGGGATCGTTGGGCAAATCTCAAAATCCTGACAGTACTTCTGAAGTTGATTTGCAGGCTACCTTAAAAGGATCTGGCCCTTGCGGAAGTGATCCATCTAAATTACAAAATATAGATGTCAAAGCACCAACCGGGGCTCCTTCCTCACCTTCCATGCAAAAGAAACCTGCTGTTGCAATGAGGCCAACAATAAGTGGATCATCAAGAGAGCTATCAGATGATGAGGAAGCAGATGGAGAGATTAATATGAGTGAAAACATGAACCCTCTTGATGCAAAACGAGTAAGGAGgatgctttctaatagggagTCTGCTAGACGCTCAAGACGAAGAAAACAGGCTCATTTAACTGAGCTGGAGACACAGGTCTCACAATTAAGAGGTGAAAATTCTTCACTGTTAAAGCGCTTAACGGATGTGAGCCAGAAATACGGTGATGCTGCAGTTGACAACAGAGTACTGAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACACTCAAAAGAATTACTGGGTTGAACCCAATGTTTCATGCCATGACTGAGATGTCATCTATGGGAATGCAGCTGTTTGATGAAAGTCCTTCTGAGACATCAGCTGATGCGGCCGTTTCTGTGCAAGAAGACCCAAATCACCACCTTTGTGAACCCACTTCTAGTAATAATGGGTTGGGATGCATTTCTTCAATTGAAAGTGTGCAGCATAACGTTGCAGCAGTGGTAGGTGACAACAAAACTTCCCTGCATAGAGTGGCTAGTTTGGAACATCTTCAGAAGCGGATTCGTGGTCGTGTAGATTCACGTGCACCTCCTTCTAATGGAGACCAATAA 927 0.4315 MDIVDSDDYQAILKTKLNLACAAVAFTRGSLGKSQNPDSTSEVDLQATLKGSGPCGSDPSKLQNIDVKAPTGAPSSPSMQKKPAVAMRPTISGSSRELSDDEEADGEINMSENMNPLDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLLKRLTDVSQKYGDAAVDNRVLKADVETLRAKVKMAEETLKRITGLNPMFHAMTEMSSMGMQLFDESPSETSADAAVSVQEDPNHHLCEPTSSNNGLGCISSIESVQHNVAAVVGDNKTSLHRVASLEHLQKRIRGRVDSRAPPSNGDQ 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03039 308 MobiDBLite consensus disorder prediction 30 109 - -
Cca03g03039 308 SMART brlzneu 116 180 IPR004827 GO:0003700|GO:0006355
Cca03g03039 308 MobiDBLite consensus disorder prediction 30 47 - -
Cca03g03039 308 Pfam bZIP transcription factor 119 169 IPR004827 GO:0003700|GO:0006355
Cca03g03039 308 Coils Coil 178 205 - -
Cca03g03039 308 Coils Coil 129 163 - -
Cca03g03039 308 Gene3D - 119 172 - -
Cca03g03039 308 SUPERFAMILY Leucine zipper domain 120 170 IPR046347 GO:0003700|GO:0006355
Cca03g03039 308 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 123 138 IPR004827 GO:0003700|GO:0006355
Cca03g03039 308 PANTHER BZIP TRANSCRIPTION FACTOR 4 289 - -
Cca03g03039 308 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 118 170 IPR004827 GO:0003700|GO:0006355
Cca03g03039 308 Pfam Basic leucine-zipper C terminal 187 297 IPR020983 -
Cca03g03039 308 PANTHER BASIC LEUCINE ZIPPER 63 4 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03039 Cca-Chr3 51848888 51852102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03039 3 209 bZIP Transcription Factor Family AT4G02640 52.174 1.94e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca03g03039 bZIP_C 2.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03039 K25784 - gmx:100798673 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03039 03 51848888 51852102 Cca03g03039 03 51848888 51852102 ECH
Cca03g03039 03 51848888 51852102 Cca02g01565 02 34349552 34353280 PCT